Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04765

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,060,609	+		RR42_RS04760	0.11	+0.6
1,060,609	+		RR42_RS04760	0.11	+1.2
1,060,610	-		RR42_RS04760	0.11	+0.6
1,060,616	-		RR42_RS04760	0.12	-1.0
1,060,616	-		RR42_RS04760	0.12	-0.8
1,060,765	+		RR42_RS04760	0.29	+0.1
1,060,765	+		RR42_RS04760	0.29	-0.1
1,060,766	-		RR42_RS04760	0.29	-0.7
1,060,801	+		RR42_RS04760	0.33	-0.2
1,060,801	+		RR42_RS04760	0.33	+0.2
1,060,801	+		RR42_RS04760	0.33	+0.7
1,060,802	-		RR42_RS04760	0.33	+0.1
1,060,802	-		RR42_RS04760	0.33	-0.5
1,060,802	-		RR42_RS04760	0.33	+1.5
1,060,924	+		RR42_RS04760	0.46	-0.5
1,060,924	+		RR42_RS04760	0.46	-1.5
1,060,924	+		RR42_RS04760	0.46	+0.4
1,060,925	-		RR42_RS04760	0.47	-0.5
1,060,925	-		RR42_RS04760	0.47	-0.1
1,060,926	+		RR42_RS04760	0.47	+0.4
1,060,926	+		RR42_RS04760	0.47	+0.4
1,060,926	+		RR42_RS04760	0.47	+0.6
1,060,926	+		RR42_RS04760	0.47	+0.3
1,060,927	-		RR42_RS04760	0.47	+1.1
1,060,927	-		RR42_RS04760	0.47	+1.1
1,060,927	-		RR42_RS04760	0.47	-2.1
1,060,927	-		RR42_RS04760	0.47	-0.3
1,060,927	-		RR42_RS04760	0.47	-0.4
1,060,928	+		RR42_RS04760	0.47	+0.2
1,060,928	+		RR42_RS04760	0.47	+1.3
1,060,928	+		RR42_RS04760	0.47	+0.2
1,060,928	+		RR42_RS04760	0.47	+0.1
1,060,928	+		RR42_RS04760	0.47	-1.9
1,060,928	+		RR42_RS04760	0.47	+1.2
1,060,928	+		RR42_RS04760	0.47	+0.5
1,060,928	+		RR42_RS04760	0.47	+0.5
1,060,928	+		RR42_RS04760	0.47	-0.2
1,060,929	-		RR42_RS04760	0.47	-0.5
1,060,929	-		RR42_RS04760	0.47	+0.5
1,060,929	-		RR42_RS04760	0.47	+0.5
1,061,020	+		RR42_RS04760	0.57	-1.2
1,061,020	+		RR42_RS04760	0.57	-0.8
1,061,020	+		RR42_RS04760	0.57	-0.0
1,061,021	-		RR42_RS04760	0.57	-0.4
1,061,029	+		RR42_RS04760	0.58	+0.5
1,061,029	+		RR42_RS04760	0.58	-1.1
1,061,029	+		RR42_RS04760	0.58	+1.2
1,061,030	-		RR42_RS04760	0.58	-0.2
1,061,030	-		RR42_RS04760	0.58	-0.9
1,061,030	-		RR42_RS04760	0.58	-0.6
1,061,125	+		RR42_RS04760	0.69	+1.7
1,061,125	+		RR42_RS04760	0.69	-1.0
1,061,125	+		RR42_RS04760	0.69	+1.1
1,061,125	+		RR42_RS04760	0.69	+0.8
1,061,126	-		RR42_RS04760	0.69	+0.8
1,061,126	-		RR42_RS04760	0.69	+0.3
1,061,381	+				-0.5
1,061,383	+				-1.8
1,061,383	+				+2.6
1,061,383	+				+0.3
1,061,383	+				-0.1
1,061,383	+				+0.1
1,061,383	+				+0.0
1,061,383	+				-0.1
1,061,383	+				-0.4
1,061,383	+				-0.0
1,061,384	-				-1.2
1,061,384	-				+0.6
1,061,384	-				-0.1
1,061,384	-				-1.5
1,061,529	+				-1.5
1,061,529	+				-1.4
1,061,530	+				+1.1
1,062,091	+		RR42_RS04765	0.72	-0.5
1,062,104	+		RR42_RS04765	0.74	-1.5
1,062,105	-		RR42_RS04765	0.74	+1.1
1,062,105	-		RR42_RS04765	0.74	-0.2
1,062,254	+				+2.3
1,062,254	+				-1.0
1,062,255	-				+0.5
1,062,255	-				-0.1
1,062,255	-				-1.0
1,062,294	-				+2.4
1,062,308	+				+0.3
1,062,308	+				-0.3
1,062,308	+				-0.1
1,062,309	-				-0.7
1,062,309	-				+0.0
1,062,370	+				+1.5
1,062,371	-				+0.8
1,062,371	-				+0.1
1,062,398	-				-1.0
1,062,661	+		RR42_RS04770	0.72	+0.5
1,062,759	-				+1.8
1,062,805	+				-1.1
1,062,806	-				+1.1
1,062,806	-				+0.0
1,062,806	-				-0.2
1,062,811	+				-1.5
1,062,811	+				+0.0
1,062,812	-				-0.1
1,062,812	-				-0.0
1,062,812	-				-0.7
1,062,812	-				+0.6
1,062,812	-				+0.0
1,062,812	-				+0.5
1,062,812	-				+0.0
1,062,812	-				-0.4
1,062,812	-				-0.4
1,062,815	+				-0.8
1,062,815	+				-0.5
1,062,815	+				-1.8
1,062,816	-				-0.7
1,062,816	-				-0.7
1,062,816	-				+0.5
1,062,816	-				+0.4
1,062,972	+		RR42_RS04775	0.13	-0.6
1,062,973	-		RR42_RS04775	0.13	+0.5
1,062,984	+		RR42_RS04775	0.14	-0.1
1,062,984	+		RR42_RS04775	0.14	+0.4
1,063,002	+		RR42_RS04775	0.16	-2.9
1,063,003	-		RR42_RS04775	0.16	+0.3
1,063,003	-		RR42_RS04775	0.16	+1.1
1,063,105	-		RR42_RS04775	0.26	+0.6
1,063,129	-		RR42_RS04775	0.29	-1.3
1,063,251	+		RR42_RS04775	0.41	-0.6
1,063,251	+		RR42_RS04775	0.41	-0.2
1,063,251	+		RR42_RS04775	0.41	+1.8
1,063,251	+		RR42_RS04775	0.41	+0.5