Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04430

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04425 and RR42_RS04430 are separated by 770 nucleotidesRR42_RS04430 and RR42_RS04435 are separated by 2 nucleotidesRR42_RS04435 and RR42_RS04440 are separated by 111 nucleotides RR42_RS04425: RR42_RS04425 - hypothetical protein, at 988,014 to 988,877 _RS04425 RR42_RS04430: RR42_RS04430 - phosphoglycolate phosphatase, at 989,648 to 990,319 _RS04430 RR42_RS04435: RR42_RS04435 - 3-demethylubiquinone-9 3-methyltransferase, at 990,322 to 991,071 _RS04435 RR42_RS04440: RR42_RS04440 - membrane protein, at 991,183 to 991,842 _RS04440 Position (kb) 989 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 988.688 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.690 kb on + strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.691 kb on - strand, within RR42_RS04425at 988.881 kb on + strandat 988.881 kb on + strandat 988.882 kb on - strandat 988.951 kb on + strandat 988.963 kb on - strandat 988.963 kb on - strandat 988.963 kb on - strandat 989.078 kb on - strandat 989.078 kb on - strandat 989.126 kb on - strandat 989.126 kb on - strandat 989.149 kb on + strandat 989.149 kb on + strandat 989.149 kb on + strandat 989.149 kb on + strandat 989.150 kb on - strandat 989.270 kb on + strandat 989.271 kb on - strandat 989.313 kb on + strandat 989.369 kb on + strandat 989.369 kb on + strandat 989.369 kb on + strandat 989.369 kb on + strandat 989.370 kb on - strandat 989.370 kb on - strandat 989.373 kb on + strandat 989.373 kb on + strandat 989.373 kb on + strandat 989.373 kb on + strandat 989.373 kb on + strandat 989.374 kb on - strandat 989.377 kb on + strandat 989.377 kb on + strandat 989.377 kb on + strandat 989.377 kb on + strandat 989.377 kb on + strandat 989.378 kb on - strandat 989.424 kb on + strandat 989.424 kb on + strandat 989.425 kb on - strandat 989.488 kb on + strandat 989.501 kb on + strandat 989.501 kb on + strandat 989.501 kb on + strandat 989.553 kb on - strandat 989.568 kb on - strandat 989.599 kb on - strandat 989.621 kb on + strandat 989.621 kb on + strandat 989.621 kb on + strandat 989.706 kb on + strandat 989.755 kb on - strand, within RR42_RS04430at 989.807 kb on + strand, within RR42_RS04430at 989.807 kb on + strand, within RR42_RS04430at 989.808 kb on - strand, within RR42_RS04430at 989.808 kb on - strand, within RR42_RS04430at 989.823 kb on + strand, within RR42_RS04430at 989.823 kb on + strand, within RR42_RS04430at 989.823 kb on + strand, within RR42_RS04430at 989.823 kb on + strand, within RR42_RS04430at 989.823 kb on + strand, within RR42_RS04430at 989.824 kb on - strand, within RR42_RS04430at 989.996 kb on - strand, within RR42_RS04430at 989.996 kb on - strand, within RR42_RS04430at 990.061 kb on + strand, within RR42_RS04430at 990.061 kb on + strand, within RR42_RS04430at 990.062 kb on - strand, within RR42_RS04430at 990.062 kb on - strand, within RR42_RS04430at 990.062 kb on - strand, within RR42_RS04430at 990.062 kb on - strand, within RR42_RS04430at 990.062 kb on - strand, within RR42_RS04430at 990.084 kb on + strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.085 kb on - strand, within RR42_RS04430at 990.088 kb on - strand, within RR42_RS04430at 990.088 kb on - strand, within RR42_RS04430at 990.309 kb on + strandat 990.310 kb on - strandat 990.310 kb on - strandat 991.128 kb on + strandat 991.129 kb on - strandat 991.184 kb on + strandat 991.185 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
remove
988,688 + RR42_RS04425 0.78 -1.2
988,690 + RR42_RS04425 0.78 +2.3
988,690 + RR42_RS04425 0.78 +0.5
988,690 + RR42_RS04425 0.78 +0.3
988,690 + RR42_RS04425 0.78 +0.3
988,690 + RR42_RS04425 0.78 -0.2
988,691 - RR42_RS04425 0.78 +0.4
988,691 - RR42_RS04425 0.78 +0.4
988,691 - RR42_RS04425 0.78 -0.7
988,691 - RR42_RS04425 0.78 +0.1
988,691 - RR42_RS04425 0.78 -0.5
988,691 - RR42_RS04425 0.78 -1.0
988,691 - RR42_RS04425 0.78 +0.0
988,691 - RR42_RS04425 0.78 -1.4
988,881 + -0.5
988,881 + +0.6
988,882 - -2.8
988,951 + -0.9
988,963 - +0.7
988,963 - -0.1
988,963 - +1.8
989,078 - -1.4
989,078 - -2.3
989,126 - -0.0
989,126 - -0.2
989,149 + -1.7
989,149 + -1.2
989,149 + -0.7
989,149 + +0.1
989,150 - -0.9
989,270 + +0.5
989,271 - +0.1
989,313 + +0.2
989,369 + -0.3
989,369 + +0.7
989,369 + +0.7
989,369 + -0.8
989,370 - -1.3
989,370 - +0.1
989,373 + -0.7
989,373 + +1.1
989,373 + +0.1
989,373 + -1.3
989,373 + -0.2
989,374 - -0.7
989,377 + +0.5
989,377 + +0.1
989,377 + +1.1
989,377 + +1.0
989,377 + -0.0
989,378 - +0.0
989,424 + +0.7
989,424 + +0.1
989,425 - -0.9
989,488 + -1.5
989,501 + -1.2
989,501 + +0.4
989,501 + +2.1
989,553 - +1.1
989,568 - -1.3
989,599 - +1.1
989,621 + -1.0
989,621 + +0.9
989,621 + +0.9
989,706 + +0.2
989,755 - RR42_RS04430 0.16 +0.8
989,807 + RR42_RS04430 0.24 +0.4
989,807 + RR42_RS04430 0.24 -0.2
989,808 - RR42_RS04430 0.24 +1.1
989,808 - RR42_RS04430 0.24 +0.5
989,823 + RR42_RS04430 0.26 +0.3
989,823 + RR42_RS04430 0.26 +1.3
989,823 + RR42_RS04430 0.26 +1.7
989,823 + RR42_RS04430 0.26 +1.8
989,823 + RR42_RS04430 0.26 +0.7
989,824 - RR42_RS04430 0.26 +0.7
989,996 - RR42_RS04430 0.52 +1.1
989,996 - RR42_RS04430 0.52 +1.4
990,061 + RR42_RS04430 0.61 +0.4
990,061 + RR42_RS04430 0.61 +1.3
990,062 - RR42_RS04430 0.62 +1.1
990,062 - RR42_RS04430 0.62 +1.4
990,062 - RR42_RS04430 0.62 +1.0
990,062 - RR42_RS04430 0.62 +0.4
990,062 - RR42_RS04430 0.62 +0.7
990,084 + RR42_RS04430 0.65 +1.0
990,085 - RR42_RS04430 0.65 +0.7
990,085 - RR42_RS04430 0.65 +1.3
990,085 - RR42_RS04430 0.65 +0.7
990,085 - RR42_RS04430 0.65 +0.3
990,085 - RR42_RS04430 0.65 +0.4
990,085 - RR42_RS04430 0.65 +0.9
990,088 - RR42_RS04430 0.65 +0.6
990,088 - RR42_RS04430 0.65 +0.4
990,309 + +1.4
990,310 - -0.4
990,310 - +0.5
991,128 + +0.8
991,129 - +0.4
991,184 + +0.1
991,185 - -1.9

Or see this region's nucleotide sequence