Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04300 and RR42_RS04305 are separated by 95 nucleotides RR42_RS04305 and RR42_RS04310 are separated by 13 nucleotides RR42_RS04310 and RR42_RS04315 are separated by 133 nucleotides
RR42_RS04300: RR42_RS04300 - nitrogen regulatory protein P-II 1, at 956,043 to 956,381
_RS04300
RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118
_RS04305
RR42_RS04310: RR42_RS04310 - DNA mismatch repair protein MutS, at 957,132 to 957,836
_RS04310
RR42_RS04315: RR42_RS04315 - thioredoxin reductase, at 957,970 to 958,917
_RS04315
Position (kb) 957
958 Strain fitness (log2 ratio) -1
0
1
2 at 956.193 kb on + strand, within RR42_RS04300 at 956.193 kb on + strand, within RR42_RS04300 at 956.194 kb on - strand, within RR42_RS04300 at 956.194 kb on - strand, within RR42_RS04300 at 956.590 kb on + strand, within RR42_RS04305 at 956.591 kb on - strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.592 kb on + strand, within RR42_RS04305 at 956.593 kb on - strand, within RR42_RS04305 at 956.593 kb on - strand, within RR42_RS04305 at 956.625 kb on + strand, within RR42_RS04305 at 956.626 kb on - strand, within RR42_RS04305 at 956.626 kb on - strand, within RR42_RS04305 at 956.843 kb on + strand, within RR42_RS04305 at 956.843 kb on + strand, within RR42_RS04305 at 956.889 kb on + strand, within RR42_RS04305 at 956.890 kb on - strand, within RR42_RS04305 at 956.890 kb on - strand, within RR42_RS04305 at 956.890 kb on - strand, within RR42_RS04305 at 956.890 kb on - strand, within RR42_RS04305 at 956.910 kb on + strand, within RR42_RS04305 at 956.910 kb on + strand, within RR42_RS04305 at 956.910 kb on + strand, within RR42_RS04305 at 956.911 kb on - strand, within RR42_RS04305 at 957.056 kb on + strand at 957.056 kb on + strand at 957.056 kb on + strand at 957.057 kb on - strand at 957.057 kb on - strand at 957.210 kb on + strand, within RR42_RS04310 at 957.210 kb on + strand, within RR42_RS04310 at 957.211 kb on - strand, within RR42_RS04310 at 957.645 kb on + strand, within RR42_RS04310 at 957.646 kb on - strand, within RR42_RS04310 at 957.865 kb on + strand at 957.866 kb on - strand at 957.866 kb on - strand at 957.867 kb on + strand at 957.867 kb on + strand at 957.868 kb on - strand at 957.868 kb on - strand at 957.971 kb on + strand at 957.972 kb on - strand at 957.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 956,193 + RR42_RS04300 0.44 +0.6 956,193 + RR42_RS04300 0.44 +0.3 956,194 - RR42_RS04300 0.45 +0.1 956,194 - RR42_RS04300 0.45 +0.4 956,590 + RR42_RS04305 0.18 -1.3 956,591 - RR42_RS04305 0.18 +0.3 956,592 + RR42_RS04305 0.18 -0.1 956,592 + RR42_RS04305 0.18 +0.1 956,592 + RR42_RS04305 0.18 -1.3 956,592 + RR42_RS04305 0.18 +0.3 956,592 + RR42_RS04305 0.18 +0.2 956,593 - RR42_RS04305 0.18 +0.7 956,593 - RR42_RS04305 0.18 +0.6 956,625 + RR42_RS04305 0.23 -0.7 956,626 - RR42_RS04305 0.23 -0.3 956,626 - RR42_RS04305 0.23 +1.7 956,843 + RR42_RS04305 0.57 +0.5 956,843 + RR42_RS04305 0.57 -0.8 956,889 + RR42_RS04305 0.64 +0.3 956,890 - RR42_RS04305 0.64 +0.8 956,890 - RR42_RS04305 0.64 -0.7 956,890 - RR42_RS04305 0.64 -0.1 956,890 - RR42_RS04305 0.64 -0.5 956,910 + RR42_RS04305 0.67 -0.0 956,910 + RR42_RS04305 0.67 -0.5 956,910 + RR42_RS04305 0.67 +1.3 956,911 - RR42_RS04305 0.68 -0.6 957,056 + +1.7 957,056 + -0.1 957,056 + +1.8 957,057 - +2.5 957,057 - -0.9 957,210 + RR42_RS04310 0.11 +0.4 957,210 + RR42_RS04310 0.11 +0.7 957,211 - RR42_RS04310 0.11 +0.3 957,645 + RR42_RS04310 0.73 -1.7 957,646 - RR42_RS04310 0.73 +0.2 957,865 + +0.2 957,866 - +0.3 957,866 - +1.3 957,867 + +0.4 957,867 + -0.1 957,868 - -0.3 957,868 - +1.2 957,971 + -0.3 957,972 - +0.2 957,972 - +0.5
Or see this region's nucleotide sequence