Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03905 and RR42_RS03910 are separated by 169 nucleotides RR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides
RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863
_RS03905
RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506
_RS03910
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 861.539 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.557 kb on - strand, within RR42_RS03905 at 861.590 kb on - strand, within RR42_RS03905 at 861.784 kb on - strand at 861.785 kb on + strand at 861.785 kb on + strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.889 kb on + strand at 862.441 kb on + strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.523 kb on + strand at 862.524 kb on - strand at 862.737 kb on + strand, within RR42_RS03915 at 862.738 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 863.052 kb on + strand, within RR42_RS03915 at 863.613 kb on + strand, within RR42_RS03915 at 863.614 kb on - strand, within RR42_RS03915 at 863.614 kb on - strand, within RR42_RS03915 at 863.626 kb on - strand, within RR42_RS03915 at 863.626 kb on - strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.841 kb on + strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.842 kb on - strand, within RR42_RS03915 at 863.910 kb on + strand, within RR42_RS03915 at 863.911 kb on - strand, within RR42_RS03915 at 863.913 kb on + strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.165 kb on + strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.382 kb on - strand, within RR42_RS03915 at 864.390 kb on + strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.519 kb on + strand, within RR42_RS03915 at 864.786 kb on + strand at 864.787 kb on - strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.875 kb on + strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 865.204 kb on + strand, within RR42_RS03925 at 865.676 kb on + strand, within RR42_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 861,539 + RR42_RS03905 0.65 -0.4 861,556 + RR42_RS03905 0.66 -0.7 861,556 + RR42_RS03905 0.66 +1.4 861,556 + RR42_RS03905 0.66 -0.5 861,556 + RR42_RS03905 0.66 -0.2 861,556 + RR42_RS03905 0.66 -0.6 861,557 - RR42_RS03905 0.67 +0.7 861,590 - RR42_RS03905 0.70 -0.9 861,784 - +1.4 861,785 + +1.4 861,785 + +0.1 861,786 - +0.3 861,786 - +0.0 861,786 - -0.9 861,786 - +0.9 861,786 - -0.3 861,786 - +1.4 861,786 - -0.9 861,786 - -0.5 861,889 + +0.3 862,441 + RR42_RS03910 0.86 +1.8 862,442 - RR42_RS03910 0.86 +2.1 862,442 - RR42_RS03910 0.86 -0.1 862,523 + -0.6 862,524 - +1.0 862,737 + RR42_RS03915 0.10 +0.9 862,738 - RR42_RS03915 0.10 +0.2 862,814 - RR42_RS03915 0.14 -1.9 862,814 - RR42_RS03915 0.14 +0.6 863,052 + RR42_RS03915 0.24 -1.0 863,613 + RR42_RS03915 0.49 +1.4 863,614 - RR42_RS03915 0.49 +2.1 863,614 - RR42_RS03915 0.49 +1.1 863,626 - RR42_RS03915 0.49 +0.0 863,626 - RR42_RS03915 0.49 -3.2 863,841 + RR42_RS03915 0.59 -0.1 863,841 + RR42_RS03915 0.59 -1.0 863,841 + RR42_RS03915 0.59 -1.2 863,842 - RR42_RS03915 0.59 -1.7 863,842 - RR42_RS03915 0.59 +2.9 863,842 - RR42_RS03915 0.59 -2.1 863,842 - RR42_RS03915 0.59 +0.3 863,910 + RR42_RS03915 0.62 -0.7 863,911 - RR42_RS03915 0.62 +1.1 863,913 + RR42_RS03915 0.62 -0.2 864,085 - RR42_RS03915 0.69 +0.2 864,085 - RR42_RS03915 0.69 +0.7 864,165 + RR42_RS03915 0.73 -0.3 864,373 - RR42_RS03915 0.82 -0.4 864,373 - RR42_RS03915 0.82 -1.0 864,382 - RR42_RS03915 0.82 +0.6 864,390 + RR42_RS03915 0.83 +0.0 864,391 - RR42_RS03915 0.83 -0.5 864,391 - RR42_RS03915 0.83 -0.1 864,519 + RR42_RS03915 0.88 +1.1 864,786 + -1.2 864,787 - +0.2 864,813 + -0.6 864,813 + +0.1 864,813 + +0.2 864,813 + -0.6 864,814 - +0.6 864,814 - -0.2 864,814 - +0.3 864,875 + RR42_RS03920 0.18 +1.2 864,876 - RR42_RS03920 0.18 +1.2 864,876 - RR42_RS03920 0.18 +1.0 865,204 + RR42_RS03925 0.12 -1.2 865,676 + RR42_RS03925 0.52 -0.3
Or see this region's nucleotide sequence