Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03745 and RR42_RS03750 are separated by 298 nucleotides RR42_RS03750 and RR42_RS03755 overlap by 4 nucleotides
RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010
_RS03745
RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824
_RS03750
RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374
_RS03755
Position (kb) 827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.553 kb on + strand, within RR42_RS03745 at 826.553 kb on + strand, within RR42_RS03745 at 826.850 kb on + strand, within RR42_RS03745 at 826.909 kb on - strand at 827.052 kb on - strand at 827.053 kb on + strand at 827.053 kb on + strand at 827.054 kb on - strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.072 kb on + strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.073 kb on - strand at 827.082 kb on + strand at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.433 kb on + strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.434 kb on - strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.438 kb on + strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.439 kb on - strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.519 kb on + strand, within RR42_RS03750 at 827.565 kb on + strand, within RR42_RS03750 at 827.687 kb on + strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750 at 827.688 kb on - strand, within RR42_RS03750 at 828.181 kb on + strand, within RR42_RS03755 at 828.182 kb on - strand, within RR42_RS03755 at 828.347 kb on - strand, within RR42_RS03755 at 828.475 kb on + strand, within RR42_RS03755 at 828.475 kb on + strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.476 kb on - strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.477 kb on + strand, within RR42_RS03755 at 828.478 kb on - strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.481 kb on + strand, within RR42_RS03755 at 828.497 kb on - strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.622 kb on + strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755 at 828.797 kb on - strand, within RR42_RS03755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 826,553 + RR42_RS03745 0.58 +1.1 826,553 + RR42_RS03745 0.58 +0.1 826,850 + RR42_RS03745 0.85 -1.5 826,909 - +0.1 827,052 - +0.8 827,053 + -1.5 827,053 + +0.1 827,054 - +0.3 827,072 + -0.5 827,072 + +0.4 827,072 + +0.3 827,072 + +0.3 827,072 + -0.3 827,072 + -0.5 827,072 + +1.2 827,072 + +0.2 827,072 + +0.5 827,072 + -0.1 827,073 - -0.1 827,073 - -0.3 827,073 - +0.7 827,073 - +0.1 827,073 - +0.8 827,073 - +1.5 827,073 - +0.7 827,073 - -0.3 827,073 - -1.9 827,073 - -0.9 827,082 + -0.7 827,433 + RR42_RS03750 0.24 +0.4 827,433 + RR42_RS03750 0.24 -0.3 827,433 + RR42_RS03750 0.24 -1.0 827,433 + RR42_RS03750 0.24 +1.2 827,434 - RR42_RS03750 0.24 +1.8 827,434 - RR42_RS03750 0.24 +1.0 827,438 + RR42_RS03750 0.25 +0.5 827,438 + RR42_RS03750 0.25 +1.8 827,438 + RR42_RS03750 0.25 +0.9 827,438 + RR42_RS03750 0.25 +0.8 827,438 + RR42_RS03750 0.25 -0.4 827,438 + RR42_RS03750 0.25 +1.3 827,438 + RR42_RS03750 0.25 +0.6 827,439 - RR42_RS03750 0.25 +0.3 827,439 - RR42_RS03750 0.25 -0.1 827,439 - RR42_RS03750 0.25 +1.5 827,439 - RR42_RS03750 0.25 +0.4 827,519 + RR42_RS03750 0.41 +1.3 827,519 + RR42_RS03750 0.41 +0.8 827,519 + RR42_RS03750 0.41 -0.4 827,519 + RR42_RS03750 0.41 -0.7 827,519 + RR42_RS03750 0.41 +0.1 827,519 + RR42_RS03750 0.41 -1.7 827,519 + RR42_RS03750 0.41 -0.8 827,519 + RR42_RS03750 0.41 +0.6 827,519 + RR42_RS03750 0.41 -0.3 827,565 + RR42_RS03750 0.50 +0.2 827,687 + RR42_RS03750 0.73 +0.0 827,688 - RR42_RS03750 0.73 -0.8 827,688 - RR42_RS03750 0.73 -0.3 828,181 + RR42_RS03755 0.23 +0.7 828,182 - RR42_RS03755 0.23 -0.5 828,347 - RR42_RS03755 0.34 -0.1 828,475 + RR42_RS03755 0.42 -0.8 828,475 + RR42_RS03755 0.42 -0.2 828,476 - RR42_RS03755 0.42 -0.9 828,476 - RR42_RS03755 0.42 -0.6 828,477 + RR42_RS03755 0.42 -0.5 828,477 + RR42_RS03755 0.42 +0.8 828,477 + RR42_RS03755 0.42 +0.7 828,477 + RR42_RS03755 0.42 +0.3 828,477 + RR42_RS03755 0.42 +0.2 828,478 - RR42_RS03755 0.42 -2.2 828,481 + RR42_RS03755 0.42 -0.1 828,481 + RR42_RS03755 0.42 +0.7 828,481 + RR42_RS03755 0.42 -0.9 828,497 - RR42_RS03755 0.44 +0.1 828,622 + RR42_RS03755 0.52 -0.3 828,622 + RR42_RS03755 0.52 -1.7 828,797 - RR42_RS03755 0.63 -0.8 828,797 - RR42_RS03755 0.63 +0.2
Or see this region's nucleotide sequence