Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03370 and RR42_RS03375 are separated by 83 nucleotides RR42_RS03375 and RR42_RS03380 are separated by 135 nucleotides
RR42_RS03370: RR42_RS03370 - fructose ABC transporter, substrate-binding component (FrcB) <small>(from data)</small>, at 749,395 to 750,372
_RS03370
RR42_RS03375: RR42_RS03375 - glucose-6-phosphate dehydrogenase, at 750,456 to 751,946
_RS03375
RR42_RS03380: RR42_RS03380 - glucose-6-phosphate isomerase, at 752,082 to 753,722
_RS03380
Position (kb) 750
751
752 Strain fitness (log2 ratio) -1
0
1
2 at 749.554 kb on + strand, within RR42_RS03370 at 749.671 kb on - strand, within RR42_RS03370 at 750.040 kb on + strand, within RR42_RS03370 at 750.346 kb on + strand at 750.473 kb on - strand at 750.527 kb on + strand at 750.633 kb on + strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.634 kb on - strand, within RR42_RS03375 at 750.724 kb on - strand, within RR42_RS03375 at 750.724 kb on - strand, within RR42_RS03375 at 750.810 kb on + strand, within RR42_RS03375 at 750.810 kb on + strand, within RR42_RS03375 at 750.981 kb on + strand, within RR42_RS03375 at 750.996 kb on + strand, within RR42_RS03375 at 750.997 kb on - strand, within RR42_RS03375 at 751.048 kb on + strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.049 kb on - strand, within RR42_RS03375 at 751.141 kb on - strand, within RR42_RS03375 at 751.327 kb on - strand, within RR42_RS03375 at 751.327 kb on - strand, within RR42_RS03375 at 751.366 kb on - strand, within RR42_RS03375 at 751.464 kb on + strand, within RR42_RS03375 at 751.464 kb on + strand, within RR42_RS03375 at 751.528 kb on + strand, within RR42_RS03375 at 751.529 kb on - strand, within RR42_RS03375 at 751.731 kb on + strand, within RR42_RS03375 at 751.867 kb on - strand at 752.030 kb on + strand at 752.375 kb on + strand, within RR42_RS03380 at 752.376 kb on - strand, within RR42_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 749,554 + RR42_RS03370 0.16 +0.4 749,671 - RR42_RS03370 0.28 -0.2 750,040 + RR42_RS03370 0.66 +0.7 750,346 + +0.1 750,473 - +2.4 750,527 + +0.7 750,633 + RR42_RS03375 0.12 +0.2 750,634 - RR42_RS03375 0.12 +1.2 750,634 - RR42_RS03375 0.12 +0.7 750,634 - RR42_RS03375 0.12 +0.7 750,724 - RR42_RS03375 0.18 +0.9 750,724 - RR42_RS03375 0.18 +1.6 750,810 + RR42_RS03375 0.24 +2.1 750,810 + RR42_RS03375 0.24 +0.1 750,981 + RR42_RS03375 0.35 +0.5 750,996 + RR42_RS03375 0.36 +0.9 750,997 - RR42_RS03375 0.36 -0.0 751,048 + RR42_RS03375 0.40 +1.0 751,049 - RR42_RS03375 0.40 +0.4 751,049 - RR42_RS03375 0.40 -0.4 751,049 - RR42_RS03375 0.40 +1.7 751,049 - RR42_RS03375 0.40 -1.2 751,141 - RR42_RS03375 0.46 +0.4 751,327 - RR42_RS03375 0.58 +1.4 751,327 - RR42_RS03375 0.58 +1.1 751,366 - RR42_RS03375 0.61 +1.6 751,464 + RR42_RS03375 0.68 +1.3 751,464 + RR42_RS03375 0.68 -1.4 751,528 + RR42_RS03375 0.72 +0.1 751,529 - RR42_RS03375 0.72 +0.4 751,731 + RR42_RS03375 0.86 -0.2 751,867 - +0.7 752,030 + +0.7 752,375 + RR42_RS03380 0.18 +0.2 752,376 - RR42_RS03380 0.18 +0.9
Or see this region's nucleotide sequence