Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03155 and RR42_RS03160 are separated by 160 nucleotides RR42_RS03160 and RR42_RS03165 are separated by 57 nucleotides
RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174
_RS03155
RR42_RS03160: RR42_RS03160 - hypothetical protein, at 698,335 to 698,775
_RS03160
RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855
_RS03165
Position (kb) 698
699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.370 kb on - strand, within RR42_RS03155 at 697.509 kb on - strand, within RR42_RS03155 at 697.509 kb on - strand, within RR42_RS03155 at 697.522 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.628 kb on - strand, within RR42_RS03155 at 697.807 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.966 kb on + strand, within RR42_RS03155 at 698.298 kb on + strand at 698.298 kb on + strand at 698.337 kb on - strand at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.705 kb on - strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 697,370 - RR42_RS03155 0.18 +2.0 697,509 - RR42_RS03155 0.33 -1.2 697,509 - RR42_RS03155 0.33 -0.1 697,522 + RR42_RS03155 0.34 +0.1 697,627 + RR42_RS03155 0.44 -1.2 697,627 + RR42_RS03155 0.44 +0.2 697,627 + RR42_RS03155 0.44 +0.6 697,628 - RR42_RS03155 0.45 +0.4 697,807 + RR42_RS03155 0.63 -2.3 697,864 + RR42_RS03155 0.68 +0.1 697,864 + RR42_RS03155 0.68 +0.3 697,864 + RR42_RS03155 0.68 -0.3 697,864 + RR42_RS03155 0.68 +0.7 697,966 + RR42_RS03155 0.79 +0.3 698,298 + -0.1 698,298 + +0.4 698,337 - -1.8 698,447 + RR42_RS03160 0.25 -1.2 698,447 + RR42_RS03160 0.25 +0.7 698,447 + RR42_RS03160 0.25 -0.5 698,447 + RR42_RS03160 0.25 +0.1 698,447 + RR42_RS03160 0.25 -0.1 698,447 + RR42_RS03160 0.25 +0.9 698,448 - RR42_RS03160 0.26 -1.1 698,448 - RR42_RS03160 0.26 +0.9 698,448 - RR42_RS03160 0.26 +2.0 698,448 - RR42_RS03160 0.26 +1.1 698,462 + RR42_RS03160 0.29 +0.7 698,462 + RR42_RS03160 0.29 +0.2 698,462 + RR42_RS03160 0.29 -0.1 698,463 - RR42_RS03160 0.29 +0.2 698,463 - RR42_RS03160 0.29 -0.5 698,463 - RR42_RS03160 0.29 -0.3 698,463 - RR42_RS03160 0.29 +2.4 698,463 - RR42_RS03160 0.29 +1.4 698,538 + RR42_RS03160 0.46 +2.0 698,538 + RR42_RS03160 0.46 +0.8 698,538 + RR42_RS03160 0.46 +0.2 698,539 - RR42_RS03160 0.46 -0.5 698,539 - RR42_RS03160 0.46 -0.5 698,539 - RR42_RS03160 0.46 -1.2 698,705 - RR42_RS03160 0.84 -0.8 698,731 + RR42_RS03160 0.90 +0.6 698,731 + RR42_RS03160 0.90 -0.9 698,731 + RR42_RS03160 0.90 +0.5 698,731 + RR42_RS03160 0.90 +0.2 698,731 + RR42_RS03160 0.90 -2.6 698,731 + RR42_RS03160 0.90 +0.4 698,731 + RR42_RS03160 0.90 +1.5 698,732 - -0.3 698,732 - +0.2 698,732 - +2.2 698,732 - +0.8
Or see this region's nucleotide sequence