Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03145 and RR42_RS03150 are separated by 48 nucleotides RR42_RS03150 and RR42_RS03155 are separated by 77 nucleotides
RR42_RS03145: RR42_RS03145 - peptidase M48, at 694,642 to 696,450
_RS03145
RR42_RS03150: RR42_RS03150 - hypothetical protein, at 696,499 to 697,110
_RS03150
RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174
_RS03155
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 695.668 kb on + strand, within RR42_RS03145 at 695.669 kb on - strand, within RR42_RS03145 at 695.765 kb on - strand, within RR42_RS03145 at 695.968 kb on + strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 695.969 kb on - strand, within RR42_RS03145 at 696.121 kb on + strand, within RR42_RS03145 at 696.122 kb on - strand, within RR42_RS03145 at 696.122 kb on - strand, within RR42_RS03145 at 696.236 kb on - strand, within RR42_RS03145 at 696.236 kb on - strand, within RR42_RS03145 at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.286 kb on + strand at 696.287 kb on - strand at 696.287 kb on - strand at 696.305 kb on - strand at 696.361 kb on + strand at 696.362 kb on - strand at 696.445 kb on - strand at 696.445 kb on - strand at 696.445 kb on - strand at 696.614 kb on - strand, within RR42_RS03150 at 696.663 kb on + strand, within RR42_RS03150 at 696.664 kb on - strand, within RR42_RS03150 at 696.664 kb on - strand, within RR42_RS03150 at 696.864 kb on - strand, within RR42_RS03150 at 696.864 kb on - strand, within RR42_RS03150 at 696.905 kb on + strand, within RR42_RS03150 at 697.004 kb on + strand, within RR42_RS03150 at 697.005 kb on - strand, within RR42_RS03150 at 697.055 kb on + strand at 697.066 kb on + strand at 697.168 kb on - strand at 697.168 kb on - strand at 697.239 kb on - strand at 697.277 kb on + strand at 697.277 kb on + strand at 697.278 kb on - strand at 697.370 kb on - strand, within RR42_RS03155 at 697.509 kb on - strand, within RR42_RS03155 at 697.509 kb on - strand, within RR42_RS03155 at 697.522 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.627 kb on + strand, within RR42_RS03155 at 697.628 kb on - strand, within RR42_RS03155 at 697.807 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.966 kb on + strand, within RR42_RS03155
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 695,668 + RR42_RS03145 0.57 -0.6 695,669 - RR42_RS03145 0.57 +0.3 695,765 - RR42_RS03145 0.62 -1.3 695,968 + RR42_RS03145 0.73 +0.5 695,969 - RR42_RS03145 0.73 +0.4 695,969 - RR42_RS03145 0.73 -0.4 695,969 - RR42_RS03145 0.73 -1.4 696,121 + RR42_RS03145 0.82 -1.8 696,122 - RR42_RS03145 0.82 +0.1 696,122 - RR42_RS03145 0.82 -0.8 696,236 - RR42_RS03145 0.88 -2.6 696,236 - RR42_RS03145 0.88 +0.2 696,286 + +0.1 696,286 + -2.4 696,286 + -0.4 696,286 + +0.3 696,286 + -3.3 696,287 - -0.6 696,287 - -0.6 696,305 - -0.4 696,361 + +0.8 696,362 - -0.4 696,445 - -0.2 696,445 - +0.2 696,445 - +0.9 696,614 - RR42_RS03150 0.19 +0.1 696,663 + RR42_RS03150 0.27 -0.4 696,664 - RR42_RS03150 0.27 +0.1 696,664 - RR42_RS03150 0.27 +0.7 696,864 - RR42_RS03150 0.60 +1.4 696,864 - RR42_RS03150 0.60 +0.0 696,905 + RR42_RS03150 0.66 +0.4 697,004 + RR42_RS03150 0.83 -0.1 697,005 - RR42_RS03150 0.83 -0.3 697,055 + -0.1 697,066 + -0.0 697,168 - +0.1 697,168 - -2.1 697,239 - -0.6 697,277 + -0.8 697,277 + +0.5 697,278 - +1.0 697,370 - RR42_RS03155 0.18 +2.0 697,509 - RR42_RS03155 0.33 -1.2 697,509 - RR42_RS03155 0.33 -0.1 697,522 + RR42_RS03155 0.34 +0.1 697,627 + RR42_RS03155 0.44 -1.2 697,627 + RR42_RS03155 0.44 +0.2 697,627 + RR42_RS03155 0.44 +0.6 697,628 - RR42_RS03155 0.45 +0.4 697,807 + RR42_RS03155 0.63 -2.3 697,864 + RR42_RS03155 0.68 +0.1 697,864 + RR42_RS03155 0.68 +0.3 697,864 + RR42_RS03155 0.68 -0.3 697,864 + RR42_RS03155 0.68 +0.7 697,966 + RR42_RS03155 0.79 +0.3
Or see this region's nucleotide sequence