Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03090 and RR42_RS03095 are separated by 69 nucleotides RR42_RS03095 and RR42_RS03100 are separated by 81 nucleotides
RR42_RS03090: RR42_RS03090 - hypothetical protein, at 683,430 to 684,104
_RS03090
RR42_RS03095: RR42_RS03095 - succinyl-CoA synthetase subunit beta, at 684,174 to 685,340
_RS03095
RR42_RS03100: RR42_RS03100 - succinate--CoA ligase, at 685,422 to 686,303
_RS03100
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 683.194 kb on + strand at 683.215 kb on + strand at 683.215 kb on + strand at 683.374 kb on - strand at 683.429 kb on + strand at 683.429 kb on + strand at 683.430 kb on - strand at 683.493 kb on + strand at 683.493 kb on + strand at 683.494 kb on - strand at 683.498 kb on + strand, within RR42_RS03090 at 683.498 kb on + strand, within RR42_RS03090 at 683.499 kb on - strand, within RR42_RS03090 at 683.512 kb on + strand, within RR42_RS03090 at 683.578 kb on + strand, within RR42_RS03090 at 683.818 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.976 kb on + strand, within RR42_RS03090 at 684.149 kb on + strand at 684.189 kb on + strand at 684.190 kb on - strand at 684.217 kb on - strand at 684.498 kb on + strand, within RR42_RS03095 at 684.726 kb on + strand, within RR42_RS03095 at 684.727 kb on - strand, within RR42_RS03095 at 684.927 kb on + strand, within RR42_RS03095 at 685.338 kb on + strand at 685.338 kb on + strand at 685.338 kb on + strand at 685.417 kb on - strand at 685.439 kb on + strand at 685.512 kb on + strand, within RR42_RS03100 at 685.645 kb on - strand, within RR42_RS03100 at 686.301 kb on + strand at 686.301 kb on + strand at 686.302 kb on - strand at 686.305 kb on + strand at 686.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 683,194 + +1.1 683,215 + +0.3 683,215 + -1.8 683,374 - +0.8 683,429 + +2.0 683,429 + -0.3 683,430 - +0.2 683,493 + -0.3 683,493 + -0.0 683,494 - -1.9 683,498 + RR42_RS03090 0.10 +1.5 683,498 + RR42_RS03090 0.10 +0.1 683,499 - RR42_RS03090 0.10 -0.3 683,512 + RR42_RS03090 0.12 +0.1 683,578 + RR42_RS03090 0.22 +0.2 683,818 + RR42_RS03090 0.57 +0.6 683,894 + RR42_RS03090 0.69 -1.2 683,894 + RR42_RS03090 0.69 +1.2 683,907 + RR42_RS03090 0.71 +1.3 683,907 + RR42_RS03090 0.71 +0.2 683,907 + RR42_RS03090 0.71 -0.5 683,953 + RR42_RS03090 0.77 +0.0 683,953 + RR42_RS03090 0.77 -0.0 683,976 + RR42_RS03090 0.81 -0.8 684,149 + +1.5 684,189 + -1.7 684,190 - -0.8 684,217 - +1.4 684,498 + RR42_RS03095 0.28 -2.0 684,726 + RR42_RS03095 0.47 -1.2 684,727 - RR42_RS03095 0.47 +0.7 684,927 + RR42_RS03095 0.65 -1.4 685,338 + +0.3 685,338 + +0.2 685,338 + +0.4 685,417 - +0.4 685,439 + -0.6 685,512 + RR42_RS03100 0.10 -1.6 685,645 - RR42_RS03100 0.25 +0.2 686,301 + -0.5 686,301 + +0.6 686,302 - -1.3 686,305 + +0.7 686,306 - +0.2
Or see this region's nucleotide sequence