Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02540 and RR42_RS02545 overlap by 4 nucleotides RR42_RS02545 and RR42_RS02550 are separated by 23 nucleotides RR42_RS02550 and RR42_RS02555 are separated by 88 nucleotides
RR42_RS02540: RR42_RS02540 - taurine ABC transporter permease, at 572,284 to 573,306
_RS02540
RR42_RS02545: RR42_RS02545 - nitrate ABC transporter ATP-binding protein, at 573,303 to 574,166
_RS02545
RR42_RS02550: RR42_RS02550 - ABC transporter permease, at 574,190 to 574,954
_RS02550
RR42_RS02555: RR42_RS02555 - transcriptional regulator, at 575,043 to 575,501
_RS02555
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.434 kb on + strand, within RR42_RS02540 at 572.435 kb on - strand, within RR42_RS02540 at 572.609 kb on - strand, within RR42_RS02540 at 572.917 kb on + strand, within RR42_RS02540 at 573.268 kb on + strand at 573.269 kb on - strand at 573.269 kb on - strand at 573.733 kb on - strand, within RR42_RS02545 at 573.733 kb on - strand, within RR42_RS02545 at 573.792 kb on + strand, within RR42_RS02545 at 573.793 kb on - strand, within RR42_RS02545 at 574.101 kb on - strand at 574.101 kb on - strand at 574.344 kb on - strand, within RR42_RS02550 at 574.375 kb on + strand, within RR42_RS02550 at 574.653 kb on + strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.898 kb on + strand at 574.898 kb on + strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 575.050 kb on + strand at 575.050 kb on + strand at 575.074 kb on + strand at 575.143 kb on + strand, within RR42_RS02555 at 575.156 kb on - strand, within RR42_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 572,434 + RR42_RS02540 0.15 -1.5 572,435 - RR42_RS02540 0.15 -0.1 572,609 - RR42_RS02540 0.32 -0.7 572,917 + RR42_RS02540 0.62 +0.0 573,268 + -0.1 573,269 - +0.7 573,269 - -2.3 573,733 - RR42_RS02545 0.50 +1.1 573,733 - RR42_RS02545 0.50 +0.5 573,792 + RR42_RS02545 0.57 +0.5 573,793 - RR42_RS02545 0.57 +2.5 574,101 - +0.5 574,101 - +0.5 574,344 - RR42_RS02550 0.20 -0.7 574,375 + RR42_RS02550 0.24 +0.8 574,653 + RR42_RS02550 0.61 -1.1 574,654 - RR42_RS02550 0.61 -0.6 574,654 - RR42_RS02550 0.61 +0.0 574,654 - RR42_RS02550 0.61 +0.0 574,721 + RR42_RS02550 0.69 -0.6 574,721 + RR42_RS02550 0.69 +1.3 574,721 + RR42_RS02550 0.69 -0.3 574,898 + +0.6 574,898 + -0.4 574,899 - +1.5 574,899 - -0.2 574,899 - -0.7 574,899 - +0.2 574,899 - -0.7 575,050 + -1.1 575,050 + -0.2 575,074 + +1.2 575,143 + RR42_RS02555 0.22 -0.4 575,156 - RR42_RS02555 0.25 -0.0
Or see this region's nucleotide sequence