Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02045

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02040 and RR42_RS02045 are separated by 283 nucleotidesRR42_RS02045 and RR42_RS02050 are separated by 99 nucleotides RR42_RS02040: RR42_RS02040 - formamidopyrimidine-DNA glycosylase, at 454,290 to 455,171 _RS02040 RR42_RS02045: RR42_RS02045 - GTPase, at 455,455 to 457,398 _RS02045 RR42_RS02050: RR42_RS02050 - adenine glycosylase, at 457,498 to 458,667 _RS02050 Position (kb) 455 456 457 458Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 454.464 kb on + strand, within RR42_RS02040at 454.464 kb on + strand, within RR42_RS02040at 454.465 kb on - strand, within RR42_RS02040at 454.465 kb on - strand, within RR42_RS02040at 454.792 kb on - strand, within RR42_RS02040at 454.792 kb on - strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.868 kb on + strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.869 kb on - strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.872 kb on + strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 454.873 kb on - strand, within RR42_RS02040at 455.071 kb on - strand, within RR42_RS02040at 455.148 kb on + strandat 455.148 kb on + strandat 455.148 kb on + strandat 455.148 kb on + strandat 455.214 kb on - strandat 455.232 kb on + strandat 455.232 kb on + strandat 455.233 kb on - strandat 455.327 kb on - strandat 455.327 kb on - strandat 455.351 kb on + strandat 455.352 kb on - strandat 455.485 kb on + strandat 455.485 kb on + strandat 455.486 kb on - strandat 455.508 kb on - strandat 455.508 kb on - strandat 455.557 kb on + strandat 455.590 kb on - strandat 455.727 kb on + strandat 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.727 kb on + strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.728 kb on - strand, within RR42_RS02045at 455.753 kb on - strand, within RR42_RS02045at 455.853 kb on + strand, within RR42_RS02045at 455.854 kb on - strand, within RR42_RS02045at 455.854 kb on - strand, within RR42_RS02045at 455.959 kb on + strand, within RR42_RS02045at 455.959 kb on + strand, within RR42_RS02045at 455.960 kb on - strand, within RR42_RS02045at 455.960 kb on - strand, within RR42_RS02045at 456.376 kb on + strand, within RR42_RS02045at 456.928 kb on + strand, within RR42_RS02045at 456.928 kb on + strand, within RR42_RS02045at 456.929 kb on - strand, within RR42_RS02045at 456.929 kb on - strand, within RR42_RS02045at 456.929 kb on - strand, within RR42_RS02045at 456.957 kb on + strand, within RR42_RS02045at 456.957 kb on + strand, within RR42_RS02045at 456.957 kb on + strand, within RR42_RS02045at 456.957 kb on + strand, within RR42_RS02045at 456.958 kb on - strand, within RR42_RS02045at 456.958 kb on - strand, within RR42_RS02045at 456.958 kb on - strand, within RR42_RS02045at 456.958 kb on - strand, within RR42_RS02045at 456.958 kb on - strand, within RR42_RS02045at 456.994 kb on + strand, within RR42_RS02045at 456.994 kb on + strand, within RR42_RS02045at 456.994 kb on + strand, within RR42_RS02045at 456.994 kb on + strand, within RR42_RS02045at 456.995 kb on - strand, within RR42_RS02045at 456.995 kb on - strand, within RR42_RS02045at 457.059 kb on + strand, within RR42_RS02045at 457.060 kb on - strand, within RR42_RS02045at 457.060 kb on - strand, within RR42_RS02045at 457.107 kb on + strand, within RR42_RS02045at 457.295 kb on + strandat 457.295 kb on + strandat 457.296 kb on - strandat 457.296 kb on - strandat 457.296 kb on - strandat 457.298 kb on + strandat 457.298 kb on + strandat 457.299 kb on - strandat 457.492 kb on + strandat 457.642 kb on + strand, within RR42_RS02050at 457.702 kb on + strand, within RR42_RS02050at 457.703 kb on - strand, within RR42_RS02050at 457.795 kb on + strand, within RR42_RS02050at 457.795 kb on + strand, within RR42_RS02050at 457.798 kb on + strand, within RR42_RS02050at 457.799 kb on - strand, within RR42_RS02050at 458.108 kb on - strand, within RR42_RS02050at 458.108 kb on - strand, within RR42_RS02050at 458.108 kb on - strand, within RR42_RS02050

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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454,464 + RR42_RS02040 0.20 +1.3
454,464 + RR42_RS02040 0.20 -0.8
454,465 - RR42_RS02040 0.20 +0.6
454,465 - RR42_RS02040 0.20 -0.5
454,792 - RR42_RS02040 0.57 +3.2
454,792 - RR42_RS02040 0.57 +0.8
454,868 + RR42_RS02040 0.66 +0.6
454,868 + RR42_RS02040 0.66 -0.9
454,868 + RR42_RS02040 0.66 -1.1
454,868 + RR42_RS02040 0.66 -2.0
454,868 + RR42_RS02040 0.66 +1.1
454,869 - RR42_RS02040 0.66 +0.5
454,869 - RR42_RS02040 0.66 -0.7
454,869 - RR42_RS02040 0.66 +0.3
454,869 - RR42_RS02040 0.66 +3.4
454,869 - RR42_RS02040 0.66 +0.9
454,869 - RR42_RS02040 0.66 +0.5
454,869 - RR42_RS02040 0.66 +1.4
454,869 - RR42_RS02040 0.66 +0.6
454,872 + RR42_RS02040 0.66 -0.6
454,872 + RR42_RS02040 0.66 -1.1
454,872 + RR42_RS02040 0.66 +0.4
454,872 + RR42_RS02040 0.66 -0.1
454,872 + RR42_RS02040 0.66 +0.5
454,872 + RR42_RS02040 0.66 -0.5
454,872 + RR42_RS02040 0.66 -1.9
454,872 + RR42_RS02040 0.66 +1.4
454,872 + RR42_RS02040 0.66 -0.4
454,872 + RR42_RS02040 0.66 +0.6
454,872 + RR42_RS02040 0.66 -1.1
454,872 + RR42_RS02040 0.66 -3.0
454,873 - RR42_RS02040 0.66 -1.9
454,873 - RR42_RS02040 0.66 +1.0
454,873 - RR42_RS02040 0.66 -0.6
454,873 - RR42_RS02040 0.66 -0.8
454,873 - RR42_RS02040 0.66 +0.1
454,873 - RR42_RS02040 0.66 +1.0
454,873 - RR42_RS02040 0.66 -0.6
454,873 - RR42_RS02040 0.66 +1.6
454,873 - RR42_RS02040 0.66 -1.9
455,071 - RR42_RS02040 0.89 +1.0
455,148 + +0.1
455,148 + +0.1
455,148 + +1.1
455,148 + +0.7
455,214 - -1.6
455,232 + +0.4
455,232 + +0.7
455,233 - +0.7
455,327 - -2.9
455,327 - +0.4
455,351 + +0.2
455,352 - -3.4
455,485 + +0.0
455,485 + +1.2
455,486 - -1.2
455,508 - -3.2
455,508 - -1.6
455,557 + +1.2
455,590 - -1.8
455,727 + -0.4
455,727 + RR42_RS02045 0.14 -4.9
455,727 + RR42_RS02045 0.14 -2.2
455,727 + RR42_RS02045 0.14 -2.7
455,727 + RR42_RS02045 0.14 -4.8
455,728 - RR42_RS02045 0.14 -2.1
455,728 - RR42_RS02045 0.14 -1.7
455,728 - RR42_RS02045 0.14 -1.1
455,728 - RR42_RS02045 0.14 -4.6
455,728 - RR42_RS02045 0.14 -3.2
455,753 - RR42_RS02045 0.15 -3.6
455,853 + RR42_RS02045 0.20 -2.2
455,854 - RR42_RS02045 0.21 -3.5
455,854 - RR42_RS02045 0.21 -3.9
455,959 + RR42_RS02045 0.26 -1.0
455,959 + RR42_RS02045 0.26 -1.5
455,960 - RR42_RS02045 0.26 -3.0
455,960 - RR42_RS02045 0.26 -2.0
456,376 + RR42_RS02045 0.47 -2.7
456,928 + RR42_RS02045 0.76 -2.2
456,928 + RR42_RS02045 0.76 -0.3
456,929 - RR42_RS02045 0.76 -0.6
456,929 - RR42_RS02045 0.76 -5.1
456,929 - RR42_RS02045 0.76 -3.2
456,957 + RR42_RS02045 0.77 -3.1
456,957 + RR42_RS02045 0.77 -3.1
456,957 + RR42_RS02045 0.77 -0.8
456,957 + RR42_RS02045 0.77 -2.9
456,958 - RR42_RS02045 0.77 -0.1
456,958 - RR42_RS02045 0.77 -3.1
456,958 - RR42_RS02045 0.77 -2.4
456,958 - RR42_RS02045 0.77 -3.1
456,958 - RR42_RS02045 0.77 -1.4
456,994 + RR42_RS02045 0.79 -0.8
456,994 + RR42_RS02045 0.79 -2.5
456,994 + RR42_RS02045 0.79 -4.4
456,994 + RR42_RS02045 0.79 -1.9
456,995 - RR42_RS02045 0.79 -2.8
456,995 - RR42_RS02045 0.79 -0.8
457,059 + RR42_RS02045 0.83 -3.1
457,060 - RR42_RS02045 0.83 -2.5
457,060 - RR42_RS02045 0.83 +0.2
457,107 + RR42_RS02045 0.85 -1.2
457,295 + -2.6
457,295 + -3.0
457,296 - -3.6
457,296 - -4.0
457,296 - -3.5
457,298 + -3.0
457,298 + -1.9
457,299 - -2.8
457,492 + +0.3
457,642 + RR42_RS02050 0.12 +0.6
457,702 + RR42_RS02050 0.17 +0.0
457,703 - RR42_RS02050 0.18 -1.2
457,795 + RR42_RS02050 0.25 -0.5
457,795 + RR42_RS02050 0.25 -0.5
457,798 + RR42_RS02050 0.26 +0.1
457,799 - RR42_RS02050 0.26 +0.8
458,108 - RR42_RS02050 0.52 -0.3
458,108 - RR42_RS02050 0.52 -0.8
458,108 - RR42_RS02050 0.52 -0.5

Or see this region's nucleotide sequence