Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01985 and RR42_RS01990 are separated by 167 nucleotides RR42_RS01990 and RR42_RS01995 are separated by 217 nucleotides RR42_RS01995 and RR42_RS02000 are separated by 69 nucleotides
RR42_RS01985: RR42_RS01985 - zinc protease, at 444,470 to 445,831
_RS01985
RR42_RS01990: RR42_RS01990 - methyltransferase, at 445,999 to 446,538
_RS01990
RR42_RS01995: RR42_RS01995 - phosphopantetheine adenylyltransferase, at 446,756 to 447,244
_RS01995
RR42_RS02000: RR42_RS02000 - ferredoxin, at 447,314 to 447,574
_RS02000
Position (kb) 445
446
447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 445.044 kb on - strand, within RR42_RS01985 at 445.044 kb on - strand, within RR42_RS01985 at 445.313 kb on - strand, within RR42_RS01985 at 445.317 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.452 kb on - strand, within RR42_RS01985 at 445.452 kb on - strand, within RR42_RS01985 at 445.466 kb on + strand, within RR42_RS01985 at 445.466 kb on + strand, within RR42_RS01985 at 445.467 kb on - strand, within RR42_RS01985 at 445.467 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.712 kb on + strand at 445.712 kb on + strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.829 kb on + strand at 445.830 kb on - strand at 445.830 kb on - strand at 445.897 kb on + strand at 445.897 kb on + strand at 445.898 kb on - strand at 445.898 kb on - strand at 445.898 kb on - strand at 445.898 kb on - strand at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.417 kb on - strand, within RR42_RS01990 at 446.417 kb on - strand, within RR42_RS01990 at 446.570 kb on + strand at 446.634 kb on + strand at 446.634 kb on + strand at 446.640 kb on + strand at 446.640 kb on + strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.697 kb on + strand at 446.744 kb on + strand at 446.744 kb on + strand at 447.242 kb on + strand at 447.247 kb on + strand at 447.247 kb on + strand at 447.247 kb on + strand at 447.248 kb on - strand at 447.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 445,044 - RR42_RS01985 0.42 +0.5 445,044 - RR42_RS01985 0.42 +0.2 445,313 - RR42_RS01985 0.62 -0.4 445,317 + RR42_RS01985 0.62 -1.1 445,358 + RR42_RS01985 0.65 +0.2 445,358 + RR42_RS01985 0.65 +0.7 445,358 + RR42_RS01985 0.65 +1.2 445,359 - RR42_RS01985 0.65 -0.1 445,359 - RR42_RS01985 0.65 -0.8 445,382 + RR42_RS01985 0.67 -0.6 445,382 + RR42_RS01985 0.67 -1.3 445,382 + RR42_RS01985 0.67 +0.4 445,382 + RR42_RS01985 0.67 +0.3 445,382 + RR42_RS01985 0.67 +0.2 445,383 - RR42_RS01985 0.67 +0.5 445,383 - RR42_RS01985 0.67 +1.3 445,383 - RR42_RS01985 0.67 +0.6 445,383 - RR42_RS01985 0.67 +0.5 445,383 - RR42_RS01985 0.67 +2.4 445,383 - RR42_RS01985 0.67 +2.6 445,383 - RR42_RS01985 0.67 -0.9 445,452 - RR42_RS01985 0.72 +1.1 445,452 - RR42_RS01985 0.72 -0.2 445,466 + RR42_RS01985 0.73 -0.7 445,466 + RR42_RS01985 0.73 +1.0 445,467 - RR42_RS01985 0.73 -0.7 445,467 - RR42_RS01985 0.73 +1.2 445,572 - RR42_RS01985 0.81 -0.1 445,572 - RR42_RS01985 0.81 -1.6 445,572 - RR42_RS01985 0.81 +1.2 445,572 - RR42_RS01985 0.81 +0.2 445,712 + +0.5 445,712 + -0.2 445,713 - +0.3 445,713 - +1.5 445,713 - -0.3 445,713 - +0.1 445,829 + +0.5 445,830 - +1.4 445,830 - +0.1 445,897 + -0.4 445,897 + -0.6 445,898 - -0.0 445,898 - +1.2 445,898 - +0.9 445,898 - -0.8 446,416 + RR42_RS01990 0.77 +1.2 446,416 + RR42_RS01990 0.77 -3.3 446,416 + RR42_RS01990 0.77 -2.9 446,416 + RR42_RS01990 0.77 -2.5 446,417 - RR42_RS01990 0.77 +0.5 446,417 - RR42_RS01990 0.77 -4.2 446,570 + +0.8 446,634 + -1.1 446,634 + +0.0 446,640 + +0.0 446,640 + +1.8 446,641 - +0.0 446,641 - +2.2 446,641 - -0.3 446,641 - +1.4 446,697 + -0.1 446,744 + -0.1 446,744 + -0.2 447,242 + -0.9 447,247 + +0.4 447,247 + +1.5 447,247 + +0.8 447,248 - +0.2 447,248 - -2.0
Or see this region's nucleotide sequence