Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01270

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01265 and RR42_RS01270 are separated by 332 nucleotidesRR42_RS01270 and RR42_RS01275 are separated by 48 nucleotides RR42_RS01265: RR42_RS01265 - S-adenosylmethionine synthetase, at 285,827 to 286,990 _RS01265 RR42_RS01270: RR42_RS01270 - 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase, at 287,323 to 288,198 _RS01270 RR42_RS01275: RR42_RS01275 - aldehyde dehydrogenase, at 288,247 to 289,659 _RS01275 Position (kb) 287 288 289Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 286.988 kb on + strandat 286.988 kb on + strandat 287.132 kb on + strandat 287.341 kb on + strandat 287.341 kb on + strandat 287.343 kb on + strandat 287.343 kb on + strandat 287.344 kb on - strandat 287.344 kb on - strandat 287.572 kb on + strand, within RR42_RS01270at 287.572 kb on + strand, within RR42_RS01270at 287.572 kb on + strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.573 kb on - strand, within RR42_RS01270at 287.600 kb on - strand, within RR42_RS01270at 287.600 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.647 kb on - strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.913 kb on + strand, within RR42_RS01270at 287.914 kb on - strand, within RR42_RS01270at 287.914 kb on - strand, within RR42_RS01270at 287.938 kb on + strand, within RR42_RS01270at 287.938 kb on + strand, within RR42_RS01270at 287.939 kb on - strand, within RR42_RS01270at 287.989 kb on + strand, within RR42_RS01270at 287.990 kb on - strand, within RR42_RS01270at 287.990 kb on - strand, within RR42_RS01270at 288.047 kb on + strand, within RR42_RS01270at 288.047 kb on + strand, within RR42_RS01270at 288.048 kb on - strand, within RR42_RS01270at 288.048 kb on - strand, within RR42_RS01270at 288.106 kb on + strand, within RR42_RS01270at 288.106 kb on + strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.107 kb on - strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.109 kb on + strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.110 kb on - strand, within RR42_RS01270at 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.138 kb on + strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.139 kb on - strandat 288.383 kb on + strandat 288.383 kb on + strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.384 kb on - strandat 288.527 kb on + strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.528 kb on - strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.560 kb on + strand, within RR42_RS01275at 288.561 kb on - strand, within RR42_RS01275at 288.561 kb on - strand, within RR42_RS01275at 288.587 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.902 kb on + strand, within RR42_RS01275at 288.903 kb on - strand, within RR42_RS01275at 288.903 kb on - strand, within RR42_RS01275

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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286,988 + -0.7
286,988 + -0.1
287,132 + +0.2
287,341 + +0.3
287,341 + -2.0
287,343 + -1.0
287,343 + -2.4
287,344 - -4.4
287,344 - -1.6
287,572 + RR42_RS01270 0.28 -2.2
287,572 + RR42_RS01270 0.28 -2.5
287,572 + RR42_RS01270 0.28 -1.0
287,573 - RR42_RS01270 0.29 -0.8
287,573 - RR42_RS01270 0.29 -2.4
287,573 - RR42_RS01270 0.29 -1.1
287,600 - RR42_RS01270 0.32 -3.1
287,600 - RR42_RS01270 0.32 -2.3
287,647 - RR42_RS01270 0.37 -1.9
287,647 - RR42_RS01270 0.37 +0.3
287,647 - RR42_RS01270 0.37 -1.2
287,913 + RR42_RS01270 0.67 +1.3
287,913 + RR42_RS01270 0.67 -1.9
287,913 + RR42_RS01270 0.67 -3.6
287,913 + RR42_RS01270 0.67 +2.3
287,914 - RR42_RS01270 0.67 -2.4
287,914 - RR42_RS01270 0.67 -3.0
287,938 + RR42_RS01270 0.70 -1.9
287,938 + RR42_RS01270 0.70 -2.4
287,939 - RR42_RS01270 0.70 -3.0
287,989 + RR42_RS01270 0.76 -1.8
287,990 - RR42_RS01270 0.76 -1.3
287,990 - RR42_RS01270 0.76 -2.5
288,047 + RR42_RS01270 0.83 -2.5
288,047 + RR42_RS01270 0.83 +0.3
288,048 - RR42_RS01270 0.83 -2.6
288,048 - RR42_RS01270 0.83 -0.1
288,106 + RR42_RS01270 0.89 -1.3
288,106 + RR42_RS01270 0.89 -3.6
288,107 - RR42_RS01270 0.89 -1.3
288,107 - RR42_RS01270 0.89 -1.4
288,107 - RR42_RS01270 0.89 -2.2
288,107 - RR42_RS01270 0.89 -2.0
288,109 + RR42_RS01270 0.90 -2.5
288,109 + RR42_RS01270 0.90 -3.2
288,109 + RR42_RS01270 0.90 -3.3
288,109 + RR42_RS01270 0.90 -1.0
288,110 - RR42_RS01270 0.90 -0.7
288,110 - RR42_RS01270 0.90 -3.2
288,110 - RR42_RS01270 0.90 -1.9
288,110 - RR42_RS01270 0.90 -2.3
288,138 + -2.3
288,138 + -2.1
288,138 + -2.0
288,138 + -5.0
288,138 + -2.5
288,139 - -2.5
288,139 - -4.2
288,139 - -3.1
288,139 - -0.9
288,139 - -3.8
288,139 - -0.6
288,383 + -0.2
288,383 + -2.0
288,384 - -0.8
288,384 - +2.0
288,384 - -0.2
288,384 - -2.2
288,527 + RR42_RS01275 0.20 +0.2
288,528 - RR42_RS01275 0.20 -1.5
288,528 - RR42_RS01275 0.20 -0.6
288,528 - RR42_RS01275 0.20 +0.1
288,560 + RR42_RS01275 0.22 -0.3
288,560 + RR42_RS01275 0.22 +0.2
288,560 + RR42_RS01275 0.22 -0.8
288,561 - RR42_RS01275 0.22 -0.2
288,561 - RR42_RS01275 0.22 +0.0
288,587 + RR42_RS01275 0.24 -0.2
288,902 + RR42_RS01275 0.46 +2.0
288,902 + RR42_RS01275 0.46 -0.2
288,902 + RR42_RS01275 0.46 +0.7
288,903 - RR42_RS01275 0.46 -0.8
288,903 - RR42_RS01275 0.46 +0.3

Or see this region's nucleotide sequence