Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00845 and RR42_RS00850 overlap by 4 nucleotides RR42_RS00850 and RR42_RS00855 are separated by 532 nucleotides RR42_RS00855 and RR42_RS00860 are separated by 198 nucleotides RR42_RS00860 and RR42_RS00865 are separated by 85 nucleotides
RR42_RS00845: RR42_RS00845 - metal ABC transporter substrate-binding protein, at 205,900 to 206,736
_RS00845
RR42_RS00850: RR42_RS00850 - hypothetical protein, at 206,733 to 206,993
_RS00850
RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599
_RS00855
RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232
_RS00860
RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776
_RS00865
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.544 kb on + strand, within RR42_RS00845 at 206.544 kb on + strand, within RR42_RS00845 at 206.590 kb on + strand, within RR42_RS00845 at 206.707 kb on + strand at 206.707 kb on + strand at 206.707 kb on + strand at 206.708 kb on - strand at 206.708 kb on - strand at 206.708 kb on - strand at 206.734 kb on + strand at 207.534 kb on + strand at 207.541 kb on - strand at 207.643 kb on - strand, within RR42_RS00855 at 207.688 kb on - strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.765 kb on + strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.766 kb on - strand, within RR42_RS00855 at 207.830 kb on + strand, within RR42_RS00855 at 207.830 kb on + strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.831 kb on - strand, within RR42_RS00855 at 207.851 kb on + strand, within RR42_RS00855 at 207.851 kb on + strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.852 kb on - strand, within RR42_RS00855 at 207.853 kb on + strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.854 kb on - strand, within RR42_RS00855 at 207.960 kb on - strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.967 kb on + strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 207.968 kb on - strand, within RR42_RS00855 at 208.036 kb on - strand, within RR42_RS00855 at 208.036 kb on - strand, within RR42_RS00855 at 208.101 kb on - strand, within RR42_RS00855 at 208.101 kb on - strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.103 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.238 kb on + strand, within RR42_RS00855 at 208.239 kb on - strand, within RR42_RS00855 at 208.239 kb on - strand, within RR42_RS00855 at 208.511 kb on + strand at 208.511 kb on + strand at 208.676 kb on - strand at 208.706 kb on + strand at 208.743 kb on + strand at 208.744 kb on - strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.825 kb on + strand at 208.826 kb on - strand at 208.826 kb on - strand at 208.882 kb on + strand, within RR42_RS00860 at 208.945 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.036 kb on - strand, within RR42_RS00860 at 209.151 kb on - strand, within RR42_RS00860 at 209.233 kb on + strand at 209.242 kb on - strand at 209.280 kb on - strand at 209.290 kb on - strand at 209.295 kb on - strand at 209.455 kb on + strand, within RR42_RS00865 at 209.455 kb on + strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.456 kb on - strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.591 kb on + strand, within RR42_RS00865 at 209.592 kb on - strand, within RR42_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 206,544 + RR42_RS00845 0.77 +0.1 206,544 + RR42_RS00845 0.77 -0.6 206,590 + RR42_RS00845 0.82 +1.3 206,707 + -2.4 206,707 + +0.4 206,707 + +0.4 206,708 - -0.1 206,708 - -0.1 206,708 - -0.1 206,734 + -2.6 207,534 + -0.1 207,541 - +1.1 207,643 - RR42_RS00855 0.11 +0.4 207,688 - RR42_RS00855 0.15 -1.3 207,765 + RR42_RS00855 0.22 -0.4 207,765 + RR42_RS00855 0.22 +0.0 207,765 + RR42_RS00855 0.22 +0.3 207,766 - RR42_RS00855 0.22 -1.1 207,766 - RR42_RS00855 0.22 -1.7 207,766 - RR42_RS00855 0.22 -0.3 207,766 - RR42_RS00855 0.22 -0.2 207,830 + RR42_RS00855 0.28 +0.0 207,830 + RR42_RS00855 0.28 -0.0 207,831 - RR42_RS00855 0.28 -0.6 207,831 - RR42_RS00855 0.28 +0.8 207,831 - RR42_RS00855 0.28 +0.2 207,851 + RR42_RS00855 0.30 -0.7 207,851 + RR42_RS00855 0.30 +0.2 207,852 - RR42_RS00855 0.30 +0.1 207,852 - RR42_RS00855 0.30 +0.2 207,852 - RR42_RS00855 0.30 +0.3 207,853 + RR42_RS00855 0.30 -0.2 207,854 - RR42_RS00855 0.31 -0.5 207,854 - RR42_RS00855 0.31 -0.8 207,854 - RR42_RS00855 0.31 +2.1 207,960 - RR42_RS00855 0.40 -0.6 207,967 + RR42_RS00855 0.41 +0.0 207,967 + RR42_RS00855 0.41 -1.8 207,967 + RR42_RS00855 0.41 +0.4 207,967 + RR42_RS00855 0.41 -0.1 207,968 - RR42_RS00855 0.41 -0.4 207,968 - RR42_RS00855 0.41 -1.0 207,968 - RR42_RS00855 0.41 +0.1 207,968 - RR42_RS00855 0.41 +1.2 207,968 - RR42_RS00855 0.41 -1.4 208,036 - RR42_RS00855 0.47 +0.5 208,036 - RR42_RS00855 0.47 -0.4 208,101 - RR42_RS00855 0.54 -0.9 208,101 - RR42_RS00855 0.54 +1.6 208,103 + RR42_RS00855 0.54 +0.8 208,103 + RR42_RS00855 0.54 -1.7 208,103 + RR42_RS00855 0.54 -0.8 208,103 + RR42_RS00855 0.54 -1.2 208,238 + RR42_RS00855 0.66 -2.5 208,238 + RR42_RS00855 0.66 -0.6 208,238 + RR42_RS00855 0.66 -1.1 208,238 + RR42_RS00855 0.66 +0.1 208,239 - RR42_RS00855 0.66 -0.3 208,239 - RR42_RS00855 0.66 -2.8 208,511 + -0.3 208,511 + +0.1 208,676 - +2.7 208,706 + -0.1 208,743 + -3.3 208,744 - -0.3 208,825 + +0.3 208,825 + -1.7 208,825 + -0.4 208,825 + +1.7 208,826 - -0.3 208,826 - -0.6 208,882 + RR42_RS00860 0.19 -0.1 208,945 - RR42_RS00860 0.34 -0.1 209,036 - RR42_RS00860 0.55 +0.5 209,036 - RR42_RS00860 0.55 -0.3 209,151 - RR42_RS00860 0.81 +0.6 209,233 + -0.1 209,242 - +0.1 209,280 - +0.2 209,290 - +0.5 209,295 - -0.9 209,455 + RR42_RS00865 0.30 +0.3 209,455 + RR42_RS00865 0.30 +0.0 209,456 - RR42_RS00865 0.30 +1.7 209,456 - RR42_RS00865 0.30 +1.3 209,456 - RR42_RS00865 0.30 +1.7 209,456 - RR42_RS00865 0.30 +0.4 209,591 + RR42_RS00865 0.59 -0.7 209,591 + RR42_RS00865 0.59 -0.3 209,592 - RR42_RS00865 0.60 -1.3
Or see this region's nucleotide sequence