Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00715

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
179,937	+				+0.9
179,937	+				+1.1
179,937	+				+0.3
179,937	+				-1.1
179,938	-				+0.4
180,371	-				+0.1
180,371	-				-0.2
180,371	-				-0.3
180,371	-				-0.2
180,603	+				-0.3
180,604	-				-0.2
180,604	-				-0.3
180,613	+				+1.3
180,614	-				+0.1
180,745	+				+0.5
180,745	+				+0.8
180,745	+				+0.2
180,745	+				+0.5
180,746	-				+0.1
180,746	-				+0.7
180,858	-		RR42_RS00715	0.13	+2.7
180,858	-		RR42_RS00715	0.13	+3.1
181,103	-		RR42_RS00715	0.42	+2.5
181,166	-		RR42_RS00715	0.49	+3.2
181,611	-				+0.6
181,721	-				+0.1
181,773	-				-1.6
181,773	-				-0.2
181,773	-				+0.7
181,773	-				-0.7
181,824	-				-1.4
181,866	-				-0.8
181,866	-				-0.8
181,925	-				-1.3
181,925	-				-1.1
181,925	-				-0.3
181,925	-				-2.2
181,925	-				-0.4
181,925	-				-1.3
181,925	-				+0.7
182,018	-		RR42_RS00720	0.15	+0.1
182,018	-		RR42_RS00720	0.15	+1.0
182,584	+		RR42_RS00720	0.61	+0.7
182,585	-		RR42_RS00720	0.61	-0.2
182,585	-		RR42_RS00720	0.61	+0.2