Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00445

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
114,621	+				+0.6
115,004	+		RR42_RS00440	0.33	-2.1
115,084	-		RR42_RS00440	0.43	+1.4
115,699	-				-1.7
115,699	-				-3.1
115,699	-				-2.5
115,699	-				-0.3
115,819	-		RR42_RS00445	0.19	-1.0
115,819	-		RR42_RS00445	0.19	-4.3
115,858	-		RR42_RS00445	0.23	-3.4
115,858	-		RR42_RS00445	0.23	-3.1
115,858	-		RR42_RS00445	0.23	-1.3
115,858	-		RR42_RS00445	0.23	-2.9
115,989	+		RR42_RS00445	0.35	-3.6
115,989	+		RR42_RS00445	0.35	-3.3
115,990	-		RR42_RS00445	0.35	-2.1
116,001	-		RR42_RS00445	0.36	-3.1
116,001	-		RR42_RS00445	0.36	-2.6
116,022	+		RR42_RS00445	0.38	-1.5
116,022	+		RR42_RS00445	0.38	+0.1
116,022	+		RR42_RS00445	0.38	-1.0
116,023	-		RR42_RS00445	0.38	-4.4
116,023	-		RR42_RS00445	0.38	-4.0
116,083	-		RR42_RS00445	0.43	-4.4
116,113	+		RR42_RS00445	0.46	-2.1
116,113	+		RR42_RS00445	0.46	-0.3
116,113	+		RR42_RS00445	0.46	-1.3
116,114	-		RR42_RS00445	0.46	-3.3
116,114	-		RR42_RS00445	0.46	-2.3
116,114	-		RR42_RS00445	0.46	-2.4
116,115	+		RR42_RS00445	0.46	-1.0
116,116	-		RR42_RS00445	0.46	-0.0
116,137	-		RR42_RS00445	0.48	-1.3
116,193	+		RR42_RS00445	0.54	-1.8
116,193	+		RR42_RS00445	0.54	-2.5
116,194	-		RR42_RS00445	0.54	-3.6
116,194	-		RR42_RS00445	0.54	-2.1
116,194	-		RR42_RS00445	0.54	-2.7
116,194	-		RR42_RS00445	0.54	-5.6
116,232	+		RR42_RS00445	0.57	-1.4
116,232	+		RR42_RS00445	0.57	-2.6
116,233	-		RR42_RS00445	0.57	-2.0
116,292	+		RR42_RS00445	0.63	-2.0
116,292	+		RR42_RS00445	0.63	-3.9
116,293	-		RR42_RS00445	0.63	-1.3
116,297	-		RR42_RS00445	0.63	-2.0
116,297	-		RR42_RS00445	0.63	-1.5
116,297	-		RR42_RS00445	0.63	-1.0
116,297	-		RR42_RS00445	0.63	-2.8
116,297	-		RR42_RS00445	0.63	-1.8
116,346	+		RR42_RS00445	0.68	-3.7
116,394	+		RR42_RS00445	0.72	-4.4
116,394	+		RR42_RS00445	0.72	-2.8
116,394	+		RR42_RS00445	0.72	-3.3
116,394	+		RR42_RS00445	0.72	+0.3
116,394	+		RR42_RS00445	0.72	-2.0
116,394	+		RR42_RS00445	0.72	-5.3
116,394	+		RR42_RS00445	0.72	-4.1
116,394	+		RR42_RS00445	0.72	-2.0
116,395	-		RR42_RS00445	0.72	-2.5
116,395	-		RR42_RS00445	0.72	-3.7
116,395	-		RR42_RS00445	0.72	-3.9
116,395	-		RR42_RS00445	0.72	-0.8
116,395	-		RR42_RS00445	0.72	-3.0
116,395	-		RR42_RS00445	0.72	-1.2
116,395	-		RR42_RS00445	0.72	-2.3
116,395	-		RR42_RS00445	0.72	-3.4
116,451	+		RR42_RS00445	0.77	-5.2
116,451	+		RR42_RS00445	0.77	-1.3
116,611	+				-3.0
116,616	+				-2.0
116,616	+				-0.7
116,616	+				-2.4
116,617	-				-2.6
116,643	+				-1.4
116,665	+				-2.6
116,666	-				-3.9
116,666	-				-3.1
116,712	+				-2.0
116,712	+				-3.1
116,713	-				-1.3
116,756	-				+3.6
116,767	-				-2.5
116,810	+				-1.5
116,810	+				-3.4
116,810	+				+0.3
116,811	-				-1.2
116,811	-				-2.4
116,811	-				-2.6
116,811	-				-0.5
116,833	+				-2.4
116,834	-				-2.9
116,912	+				-2.4
116,921	-				+1.7
116,938	+				-2.6
117,322	-				+0.2
117,322	-				-0.1
117,363	+				-2.5
117,420	+		RR42_RS00455	0.12	-0.0
117,588	+		RR42_RS00455	0.33	+1.7
117,588	+		RR42_RS00455	0.33	+0.3
117,588	+		RR42_RS00455	0.33	-2.9
117,588	+		RR42_RS00455	0.33	+0.7
117,589	-		RR42_RS00455	0.33	+1.3