Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5722

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5721 and Pf6N2E2_5722 overlap by 1 nucleotidesPf6N2E2_5722 and Pf6N2E2_5723 are separated by 100 nucleotides Pf6N2E2_5721 - Cysteine synthase B (EC 2.5.1.47), at 6,537,549 to 6,538,451 _5721 Pf6N2E2_5722 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939, at 6,538,451 to 6,539,821 _5722 Pf6N2E2_5723 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 6,539,922 to 6,542,168 _5723 Position (kb) 6538 6539 6540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6537.460 kb on - strandat 6537.460 kb on - strandat 6537.487 kb on + strandat 6537.510 kb on + strandat 6537.511 kb on - strandat 6537.515 kb on + strandat 6539.506 kb on + strand, within Pf6N2E2_5722at 6539.532 kb on + strand, within Pf6N2E2_5722at 6539.660 kb on + strand, within Pf6N2E2_5722at 6539.660 kb on + strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.661 kb on - strand, within Pf6N2E2_5722at 6539.664 kb on + strand, within Pf6N2E2_5722at 6539.664 kb on + strand, within Pf6N2E2_5722at 6539.665 kb on - strand, within Pf6N2E2_5722at 6539.749 kb on + strandat 6539.749 kb on + strandat 6539.788 kb on - strandat 6539.855 kb on + strandat 6539.904 kb on + strandat 6539.913 kb on + strandat 6539.913 kb on + strandat 6539.913 kb on + strandat 6539.913 kb on + strandat 6539.914 kb on - strandat 6539.917 kb on + strandat 6539.917 kb on + strandat 6539.966 kb on + strandat 6540.074 kb on + strandat 6540.422 kb on + strand, within Pf6N2E2_5723at 6540.423 kb on - strand, within Pf6N2E2_5723at 6540.423 kb on - strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.498 kb on + strand, within Pf6N2E2_5723at 6540.499 kb on - strand, within Pf6N2E2_5723at 6540.499 kb on - strand, within Pf6N2E2_5723at 6540.499 kb on - strand, within Pf6N2E2_5723at 6540.499 kb on - strand, within Pf6N2E2_5723at 6540.499 kb on - strand, within Pf6N2E2_5723at 6540.585 kb on + strand, within Pf6N2E2_5723at 6540.586 kb on - strand, within Pf6N2E2_5723at 6540.586 kb on - strand, within Pf6N2E2_5723at 6540.586 kb on - strand, within Pf6N2E2_5723at 6540.724 kb on - strand, within Pf6N2E2_5723

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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6,537,460 - +0.9
6,537,460 - +0.7
6,537,487 + -0.3
6,537,510 + -1.0
6,537,511 - +0.4
6,537,515 + +1.0
6,539,506 + Pf6N2E2_5722 0.77 +0.3
6,539,532 + Pf6N2E2_5722 0.79 -0.2
6,539,660 + Pf6N2E2_5722 0.88 -2.4
6,539,660 + Pf6N2E2_5722 0.88 -1.4
6,539,661 - Pf6N2E2_5722 0.88 -2.4
6,539,661 - Pf6N2E2_5722 0.88 -0.5
6,539,661 - Pf6N2E2_5722 0.88 -3.0
6,539,661 - Pf6N2E2_5722 0.88 -3.3
6,539,661 - Pf6N2E2_5722 0.88 -0.5
6,539,661 - Pf6N2E2_5722 0.88 -2.4
6,539,664 + Pf6N2E2_5722 0.88 -0.1
6,539,664 + Pf6N2E2_5722 0.88 +0.1
6,539,665 - Pf6N2E2_5722 0.89 -3.3
6,539,749 + -0.7
6,539,749 + +1.5
6,539,788 - -3.1
6,539,855 + -1.2
6,539,904 + -1.3
6,539,913 + -0.2
6,539,913 + -2.3
6,539,913 + -0.6
6,539,913 + -0.9
6,539,914 - -1.7
6,539,917 + -3.6
6,539,917 + -2.1
6,539,966 + -3.1
6,540,074 + -2.4
6,540,422 + Pf6N2E2_5723 0.22 -3.4
6,540,423 - Pf6N2E2_5723 0.22 -2.4
6,540,423 - Pf6N2E2_5723 0.22 -2.9
6,540,498 + Pf6N2E2_5723 0.26 -3.4
6,540,498 + Pf6N2E2_5723 0.26 -4.3
6,540,498 + Pf6N2E2_5723 0.26 -3.1
6,540,498 + Pf6N2E2_5723 0.26 -3.8
6,540,498 + Pf6N2E2_5723 0.26 -2.6
6,540,498 + Pf6N2E2_5723 0.26 -3.9
6,540,498 + Pf6N2E2_5723 0.26 -1.9
6,540,498 + Pf6N2E2_5723 0.26 -3.1
6,540,498 + Pf6N2E2_5723 0.26 -0.2
6,540,498 + Pf6N2E2_5723 0.26 -1.9
6,540,498 + Pf6N2E2_5723 0.26 -3.8
6,540,498 + Pf6N2E2_5723 0.26 -2.9
6,540,498 + Pf6N2E2_5723 0.26 -3.5
6,540,499 - Pf6N2E2_5723 0.26 -2.3
6,540,499 - Pf6N2E2_5723 0.26 -1.9
6,540,499 - Pf6N2E2_5723 0.26 -2.8
6,540,499 - Pf6N2E2_5723 0.26 -1.2
6,540,499 - Pf6N2E2_5723 0.26 -1.8
6,540,585 + Pf6N2E2_5723 0.30 -3.5
6,540,586 - Pf6N2E2_5723 0.30 -2.6
6,540,586 - Pf6N2E2_5723 0.30 -1.9
6,540,586 - Pf6N2E2_5723 0.30 -0.7
6,540,724 - Pf6N2E2_5723 0.36 -3.7

Or see this region's nucleotide sequence