Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5721 and Pf6N2E2_5722 overlap by 1 nucleotides Pf6N2E2_5722 and Pf6N2E2_5723 are separated by 100 nucleotides
Pf6N2E2_5721 - Cysteine synthase B (EC 2.5.1.47), at 6,537,549 to 6,538,451
_5721
Pf6N2E2_5722 - 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939, at 6,538,451 to 6,539,821
_5722
Pf6N2E2_5723 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 6,539,922 to 6,542,168
_5723
Position (kb)
6538
6539
6540 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6537.460 kb on - strand at 6537.460 kb on - strand at 6537.487 kb on + strand at 6537.510 kb on + strand at 6537.511 kb on - strand at 6537.515 kb on + strand at 6539.506 kb on + strand, within Pf6N2E2_5722 at 6539.532 kb on + strand, within Pf6N2E2_5722 at 6539.660 kb on + strand, within Pf6N2E2_5722 at 6539.660 kb on + strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.661 kb on - strand, within Pf6N2E2_5722 at 6539.664 kb on + strand, within Pf6N2E2_5722 at 6539.664 kb on + strand, within Pf6N2E2_5722 at 6539.665 kb on - strand, within Pf6N2E2_5722 at 6539.749 kb on + strand at 6539.749 kb on + strand at 6539.788 kb on - strand at 6539.855 kb on + strand at 6539.904 kb on + strand at 6539.913 kb on + strand at 6539.913 kb on + strand at 6539.913 kb on + strand at 6539.913 kb on + strand at 6539.914 kb on - strand at 6539.917 kb on + strand at 6539.917 kb on + strand at 6539.966 kb on + strand at 6540.074 kb on + strand at 6540.422 kb on + strand, within Pf6N2E2_5723 at 6540.423 kb on - strand, within Pf6N2E2_5723 at 6540.423 kb on - strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.498 kb on + strand, within Pf6N2E2_5723 at 6540.499 kb on - strand, within Pf6N2E2_5723 at 6540.499 kb on - strand, within Pf6N2E2_5723 at 6540.499 kb on - strand, within Pf6N2E2_5723 at 6540.499 kb on - strand, within Pf6N2E2_5723 at 6540.499 kb on - strand, within Pf6N2E2_5723 at 6540.585 kb on + strand, within Pf6N2E2_5723 at 6540.586 kb on - strand, within Pf6N2E2_5723 at 6540.586 kb on - strand, within Pf6N2E2_5723 at 6540.586 kb on - strand, within Pf6N2E2_5723 at 6540.724 kb on - strand, within Pf6N2E2_5723
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 6,537,460 - +0.9 6,537,460 - +0.7 6,537,487 + -0.3 6,537,510 + -1.0 6,537,511 - +0.4 6,537,515 + +1.0 6,539,506 + Pf6N2E2_5722 0.77 +0.3 6,539,532 + Pf6N2E2_5722 0.79 -0.2 6,539,660 + Pf6N2E2_5722 0.88 -2.4 6,539,660 + Pf6N2E2_5722 0.88 -1.4 6,539,661 - Pf6N2E2_5722 0.88 -2.4 6,539,661 - Pf6N2E2_5722 0.88 -0.5 6,539,661 - Pf6N2E2_5722 0.88 -3.0 6,539,661 - Pf6N2E2_5722 0.88 -3.3 6,539,661 - Pf6N2E2_5722 0.88 -0.5 6,539,661 - Pf6N2E2_5722 0.88 -2.4 6,539,664 + Pf6N2E2_5722 0.88 -0.1 6,539,664 + Pf6N2E2_5722 0.88 +0.1 6,539,665 - Pf6N2E2_5722 0.89 -3.3 6,539,749 + -0.7 6,539,749 + +1.5 6,539,788 - -3.1 6,539,855 + -1.2 6,539,904 + -1.3 6,539,913 + -0.2 6,539,913 + -2.3 6,539,913 + -0.6 6,539,913 + -0.9 6,539,914 - -1.7 6,539,917 + -3.6 6,539,917 + -2.1 6,539,966 + -3.1 6,540,074 + -2.4 6,540,422 + Pf6N2E2_5723 0.22 -3.4 6,540,423 - Pf6N2E2_5723 0.22 -2.4 6,540,423 - Pf6N2E2_5723 0.22 -2.9 6,540,498 + Pf6N2E2_5723 0.26 -3.4 6,540,498 + Pf6N2E2_5723 0.26 -4.3 6,540,498 + Pf6N2E2_5723 0.26 -3.1 6,540,498 + Pf6N2E2_5723 0.26 -3.8 6,540,498 + Pf6N2E2_5723 0.26 -2.6 6,540,498 + Pf6N2E2_5723 0.26 -3.9 6,540,498 + Pf6N2E2_5723 0.26 -1.9 6,540,498 + Pf6N2E2_5723 0.26 -3.1 6,540,498 + Pf6N2E2_5723 0.26 -0.2 6,540,498 + Pf6N2E2_5723 0.26 -1.9 6,540,498 + Pf6N2E2_5723 0.26 -3.8 6,540,498 + Pf6N2E2_5723 0.26 -2.9 6,540,498 + Pf6N2E2_5723 0.26 -3.5 6,540,499 - Pf6N2E2_5723 0.26 -2.3 6,540,499 - Pf6N2E2_5723 0.26 -1.9 6,540,499 - Pf6N2E2_5723 0.26 -2.8 6,540,499 - Pf6N2E2_5723 0.26 -1.2 6,540,499 - Pf6N2E2_5723 0.26 -1.8 6,540,585 + Pf6N2E2_5723 0.30 -3.5 6,540,586 - Pf6N2E2_5723 0.30 -2.6 6,540,586 - Pf6N2E2_5723 0.30 -1.9 6,540,586 - Pf6N2E2_5723 0.30 -0.7 6,540,724 - Pf6N2E2_5723 0.36 -3.7
Or see this region's nucleotide sequence