Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5207

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5206 and Pf6N2E2_5207 are separated by 488 nucleotidesPf6N2E2_5207 and Pf6N2E2_5208 overlap by 12 nucleotides Pf6N2E2_5206 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 6,006,620 to 6,007,363 _5206 Pf6N2E2_5207 - hypothetical protein, at 6,007,852 to 6,008,001 _5207 Pf6N2E2_5208 - Glycine cleavage system transcriptional activator GcvA, at 6,007,990 to 6,008,922 _5208 Position (kb) 6007 6008 6009Strain fitness (log2 ratio) -2 -1 0 1at 6006.923 kb on + strand, within Pf6N2E2_5206at 6006.923 kb on + strand, within Pf6N2E2_5206at 6006.923 kb on + strand, within Pf6N2E2_5206at 6006.923 kb on + strand, within Pf6N2E2_5206at 6006.924 kb on - strand, within Pf6N2E2_5206at 6006.924 kb on - strand, within Pf6N2E2_5206at 6006.924 kb on - strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.934 kb on + strand, within Pf6N2E2_5206at 6006.935 kb on - strand, within Pf6N2E2_5206at 6006.935 kb on - strand, within Pf6N2E2_5206at 6006.935 kb on - strand, within Pf6N2E2_5206at 6006.970 kb on - strand, within Pf6N2E2_5206at 6006.970 kb on - strand, within Pf6N2E2_5206at 6006.970 kb on - strand, within Pf6N2E2_5206at 6007.006 kb on + strand, within Pf6N2E2_5206at 6007.007 kb on - strand, within Pf6N2E2_5206at 6007.206 kb on - strand, within Pf6N2E2_5206at 6007.214 kb on + strand, within Pf6N2E2_5206at 6007.214 kb on + strand, within Pf6N2E2_5206at 6007.214 kb on + strand, within Pf6N2E2_5206at 6007.214 kb on + strand, within Pf6N2E2_5206at 6007.214 kb on + strand, within Pf6N2E2_5206at 6007.215 kb on - strand, within Pf6N2E2_5206at 6007.313 kb on + strandat 6007.313 kb on + strandat 6007.313 kb on + strandat 6007.313 kb on + strandat 6007.314 kb on - strandat 6007.314 kb on - strandat 6007.314 kb on - strandat 6007.314 kb on - strandat 6007.314 kb on - strandat 6007.332 kb on + strandat 6007.333 kb on - strandat 6007.333 kb on - strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.410 kb on + strandat 6007.411 kb on - strandat 6007.411 kb on - strandat 6007.411 kb on - strandat 6007.411 kb on - strandat 6007.417 kb on - strandat 6007.417 kb on - strandat 6007.434 kb on + strandat 6007.617 kb on + strandat 6007.617 kb on + strandat 6007.617 kb on + strandat 6007.617 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.621 kb on + strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.622 kb on - strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.625 kb on + strandat 6007.626 kb on - strandat 6007.626 kb on - strandat 6007.626 kb on - strandat 6007.626 kb on - strandat 6007.626 kb on - strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.629 kb on + strandat 6007.630 kb on - strandat 6007.630 kb on - strandat 6007.630 kb on - strandat 6007.630 kb on - strandat 6007.734 kb on + strandat 6007.762 kb on + strandat 6007.763 kb on - strandat 6007.763 kb on - strandat 6007.798 kb on - strandat 6007.798 kb on - strandat 6007.798 kb on - strandat 6007.827 kb on + strandat 6007.827 kb on + strandat 6007.872 kb on - strand, within Pf6N2E2_5207at 6007.913 kb on + strand, within Pf6N2E2_5207at 6007.991 kb on + strandat 6007.991 kb on + strandat 6007.991 kb on + strandat 6007.992 kb on - strandat 6007.992 kb on - strandat 6008.056 kb on + strandat 6008.057 kb on - strandat 6008.078 kb on + strandat 6008.087 kb on + strand, within Pf6N2E2_5208at 6008.088 kb on - strand, within Pf6N2E2_5208at 6008.088 kb on - strand, within Pf6N2E2_5208at 6008.088 kb on - strand, within Pf6N2E2_5208at 6008.088 kb on - strand, within Pf6N2E2_5208at 6008.088 kb on - strand, within Pf6N2E2_5208at 6008.090 kb on + strand, within Pf6N2E2_5208at 6008.090 kb on + strand, within Pf6N2E2_5208at 6008.091 kb on - strand, within Pf6N2E2_5208at 6008.091 kb on - strand, within Pf6N2E2_5208at 6008.091 kb on - strand, within Pf6N2E2_5208at 6008.091 kb on - strand, within Pf6N2E2_5208at 6008.207 kb on - strand, within Pf6N2E2_5208at 6008.271 kb on + strand, within Pf6N2E2_5208at 6008.271 kb on + strand, within Pf6N2E2_5208at 6008.272 kb on - strand, within Pf6N2E2_5208at 6008.332 kb on + strand, within Pf6N2E2_5208at 6008.332 kb on + strand, within Pf6N2E2_5208at 6008.332 kb on + strand, within Pf6N2E2_5208at 6008.332 kb on + strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.333 kb on - strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.542 kb on + strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.543 kb on - strand, within Pf6N2E2_5208at 6008.628 kb on + strand, within Pf6N2E2_5208at 6008.629 kb on - strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.641 kb on + strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.642 kb on - strand, within Pf6N2E2_5208at 6008.749 kb on - strand, within Pf6N2E2_5208at 6008.778 kb on + strand, within Pf6N2E2_5208at 6008.778 kb on + strand, within Pf6N2E2_5208at 6008.778 kb on + strand, within Pf6N2E2_5208at 6008.779 kb on - strand, within Pf6N2E2_5208at 6008.779 kb on - strand, within Pf6N2E2_5208at 6008.799 kb on + strand, within Pf6N2E2_5208at 6008.799 kb on + strand, within Pf6N2E2_5208at 6008.903 kb on - strandat 6008.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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6,006,923 + Pf6N2E2_5206 0.41 -0.4
6,006,923 + Pf6N2E2_5206 0.41 -0.2
6,006,923 + Pf6N2E2_5206 0.41 +0.7
6,006,923 + Pf6N2E2_5206 0.41 -0.1
6,006,924 - Pf6N2E2_5206 0.41 +1.1
6,006,924 - Pf6N2E2_5206 0.41 -0.1
6,006,924 - Pf6N2E2_5206 0.41 +0.2
6,006,934 + Pf6N2E2_5206 0.42 +0.1
6,006,934 + Pf6N2E2_5206 0.42 +0.3
6,006,934 + Pf6N2E2_5206 0.42 +0.4
6,006,934 + Pf6N2E2_5206 0.42 -1.8
6,006,934 + Pf6N2E2_5206 0.42 +0.8
6,006,934 + Pf6N2E2_5206 0.42 +0.4
6,006,935 - Pf6N2E2_5206 0.42 -0.5
6,006,935 - Pf6N2E2_5206 0.42 +1.6
6,006,935 - Pf6N2E2_5206 0.42 +1.2
6,006,970 - Pf6N2E2_5206 0.47 +0.4
6,006,970 - Pf6N2E2_5206 0.47 +0.4
6,006,970 - Pf6N2E2_5206 0.47 -0.2
6,007,006 + Pf6N2E2_5206 0.52 +0.5
6,007,007 - Pf6N2E2_5206 0.52 +0.0
6,007,206 - Pf6N2E2_5206 0.79 +0.0
6,007,214 + Pf6N2E2_5206 0.80 +0.1
6,007,214 + Pf6N2E2_5206 0.80 +0.4
6,007,214 + Pf6N2E2_5206 0.80 +0.3
6,007,214 + Pf6N2E2_5206 0.80 +1.1
6,007,214 + Pf6N2E2_5206 0.80 -0.2
6,007,215 - Pf6N2E2_5206 0.80 +0.5
6,007,313 + -1.1
6,007,313 + -0.4
6,007,313 + +0.3
6,007,313 + +0.5
6,007,314 - +0.6
6,007,314 - +0.1
6,007,314 - +0.0
6,007,314 - -0.7
6,007,314 - +0.8
6,007,332 + +0.2
6,007,333 - -0.1
6,007,333 - +0.2
6,007,410 + -1.2
6,007,410 + +0.5
6,007,410 + +0.5
6,007,410 + +0.6
6,007,410 + +0.6
6,007,410 + +0.6
6,007,410 + +0.7
6,007,410 + +0.2
6,007,410 + +0.5
6,007,410 + +0.7
6,007,411 - +0.6
6,007,411 - +0.4
6,007,411 - -0.1
6,007,411 - +0.0
6,007,417 - -0.1
6,007,417 - -1.2
6,007,434 + +0.2
6,007,617 + -0.1
6,007,617 + +0.4
6,007,617 + +0.9
6,007,617 + +0.1
6,007,621 + +0.4
6,007,621 + +0.2
6,007,621 + -1.8
6,007,621 + -2.5
6,007,621 + +0.6
6,007,621 + -0.5
6,007,621 + +0.5
6,007,621 + +0.4
6,007,621 + +1.6
6,007,621 + -1.5
6,007,621 + -0.0
6,007,621 + +0.2
6,007,621 + +1.5
6,007,621 + +0.8
6,007,621 + -0.0
6,007,621 + +0.2
6,007,621 + -0.0
6,007,621 + +0.5
6,007,621 + -0.8
6,007,621 + +0.2
6,007,621 + -0.9
6,007,621 + -0.4
6,007,621 + +0.8
6,007,621 + +0.1
6,007,621 + -0.0
6,007,621 + -0.4
6,007,621 + +0.4
6,007,621 + -0.2
6,007,621 + +1.6
6,007,622 - -0.3
6,007,622 - +1.2
6,007,622 - -1.0
6,007,622 - +0.7
6,007,622 - +0.9
6,007,622 - -0.1
6,007,622 - -0.2
6,007,622 - -1.0
6,007,622 - -0.0
6,007,622 - +0.1
6,007,622 - +0.5
6,007,625 + -0.3
6,007,625 + -0.3
6,007,625 + +0.7
6,007,625 + -0.1
6,007,625 + +0.9
6,007,625 + +0.0
6,007,625 + -0.2
6,007,625 + +0.0
6,007,625 + -0.5
6,007,625 + +1.0
6,007,625 + +0.2
6,007,625 + +0.6
6,007,626 - +0.2
6,007,626 - +1.2
6,007,626 - +1.4
6,007,626 - +0.6
6,007,626 - +0.9
6,007,629 + -0.5
6,007,629 + -0.8
6,007,629 + +0.2
6,007,629 + -0.1
6,007,629 + -0.4
6,007,629 + -0.7
6,007,629 + +0.0
6,007,630 - +0.7
6,007,630 - -0.0
6,007,630 - -2.1
6,007,630 - -1.0
6,007,734 + -0.6
6,007,762 + +0.4
6,007,763 - +0.2
6,007,763 - -0.3
6,007,798 - +0.2
6,007,798 - +0.8
6,007,798 - +0.2
6,007,827 + -0.6
6,007,827 + -0.0
6,007,872 - Pf6N2E2_5207 0.13 +0.4
6,007,913 + Pf6N2E2_5207 0.41 -0.7
6,007,991 + +0.6
6,007,991 + -0.3
6,007,991 + -0.0
6,007,992 - -0.2
6,007,992 - +0.6
6,008,056 + +0.1
6,008,057 - +0.0
6,008,078 + +1.1
6,008,087 + Pf6N2E2_5208 0.10 +0.1
6,008,088 - Pf6N2E2_5208 0.11 +0.9
6,008,088 - Pf6N2E2_5208 0.11 -0.1
6,008,088 - Pf6N2E2_5208 0.11 +0.7
6,008,088 - Pf6N2E2_5208 0.11 +1.4
6,008,088 - Pf6N2E2_5208 0.11 +0.5
6,008,090 + Pf6N2E2_5208 0.11 +0.2
6,008,090 + Pf6N2E2_5208 0.11 +0.5
6,008,091 - Pf6N2E2_5208 0.11 -0.5
6,008,091 - Pf6N2E2_5208 0.11 -0.5
6,008,091 - Pf6N2E2_5208 0.11 +0.5
6,008,091 - Pf6N2E2_5208 0.11 +1.4
6,008,207 - Pf6N2E2_5208 0.23 -0.2
6,008,271 + Pf6N2E2_5208 0.30 +0.0
6,008,271 + Pf6N2E2_5208 0.30 -0.5
6,008,272 - Pf6N2E2_5208 0.30 -1.5
6,008,332 + Pf6N2E2_5208 0.37 +0.6
6,008,332 + Pf6N2E2_5208 0.37 -1.1
6,008,332 + Pf6N2E2_5208 0.37 +0.2
6,008,332 + Pf6N2E2_5208 0.37 +0.3
6,008,333 - Pf6N2E2_5208 0.37 -0.1
6,008,333 - Pf6N2E2_5208 0.37 +0.2
6,008,333 - Pf6N2E2_5208 0.37 +0.3
6,008,333 - Pf6N2E2_5208 0.37 +0.0
6,008,333 - Pf6N2E2_5208 0.37 +0.6
6,008,333 - Pf6N2E2_5208 0.37 +0.4
6,008,542 + Pf6N2E2_5208 0.59 +0.5
6,008,542 + Pf6N2E2_5208 0.59 +0.8
6,008,542 + Pf6N2E2_5208 0.59 -0.2
6,008,542 + Pf6N2E2_5208 0.59 -0.9
6,008,542 + Pf6N2E2_5208 0.59 +1.3
6,008,542 + Pf6N2E2_5208 0.59 -0.2
6,008,542 + Pf6N2E2_5208 0.59 -0.4
6,008,542 + Pf6N2E2_5208 0.59 +0.3
6,008,542 + Pf6N2E2_5208 0.59 -0.4
6,008,542 + Pf6N2E2_5208 0.59 +0.4
6,008,543 - Pf6N2E2_5208 0.59 +0.6
6,008,543 - Pf6N2E2_5208 0.59 -0.2
6,008,543 - Pf6N2E2_5208 0.59 +0.0
6,008,543 - Pf6N2E2_5208 0.59 -0.4
6,008,543 - Pf6N2E2_5208 0.59 +0.1
6,008,543 - Pf6N2E2_5208 0.59 -0.2
6,008,543 - Pf6N2E2_5208 0.59 +0.7
6,008,628 + Pf6N2E2_5208 0.68 -0.3
6,008,629 - Pf6N2E2_5208 0.68 -0.3
6,008,641 + Pf6N2E2_5208 0.70 -1.0
6,008,641 + Pf6N2E2_5208 0.70 -0.5
6,008,641 + Pf6N2E2_5208 0.70 -0.6
6,008,641 + Pf6N2E2_5208 0.70 +1.5
6,008,641 + Pf6N2E2_5208 0.70 +0.4
6,008,641 + Pf6N2E2_5208 0.70 +0.6
6,008,641 + Pf6N2E2_5208 0.70 +0.6
6,008,641 + Pf6N2E2_5208 0.70 -0.4
6,008,641 + Pf6N2E2_5208 0.70 -0.6
6,008,642 - Pf6N2E2_5208 0.70 +0.2
6,008,642 - Pf6N2E2_5208 0.70 +0.7
6,008,642 - Pf6N2E2_5208 0.70 +0.2
6,008,642 - Pf6N2E2_5208 0.70 +0.8
6,008,642 - Pf6N2E2_5208 0.70 +0.5
6,008,642 - Pf6N2E2_5208 0.70 +0.2
6,008,642 - Pf6N2E2_5208 0.70 +1.1
6,008,642 - Pf6N2E2_5208 0.70 +0.3
6,008,642 - Pf6N2E2_5208 0.70 -0.2
6,008,642 - Pf6N2E2_5208 0.70 -0.1
6,008,642 - Pf6N2E2_5208 0.70 +0.9
6,008,642 - Pf6N2E2_5208 0.70 +0.2
6,008,749 - Pf6N2E2_5208 0.81 -0.2
6,008,778 + Pf6N2E2_5208 0.84 -1.0
6,008,778 + Pf6N2E2_5208 0.84 +0.1
6,008,778 + Pf6N2E2_5208 0.84 -0.5
6,008,779 - Pf6N2E2_5208 0.85 +1.1
6,008,779 - Pf6N2E2_5208 0.85 +0.6
6,008,799 + Pf6N2E2_5208 0.87 +0.9
6,008,799 + Pf6N2E2_5208 0.87 +0.7
6,008,903 - -0.5
6,008,907 - +0.6

Or see this region's nucleotide sequence