Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1394 and Pf6N2E2_1395 are separated by 27 nucleotides Pf6N2E2_1395 and Pf6N2E2_1396 overlap by 4 nucleotides Pf6N2E2_1396 and Pf6N2E2_1397 overlap by 4 nucleotides
Pf6N2E2_1394 - FIG00953323: hypothetical protein, at 1,634,368 to 1,635,534
_1394
Pf6N2E2_1395 - Uncharacterized conserved protein, at 1,635,562 to 1,636,551
_1395
Pf6N2E2_1396 - ABC transporter, ATP-binding protein, at 1,636,548 to 1,637,279
_1396
Pf6N2E2_1397 - ABC transporter permease protein, at 1,637,276 to 1,638,067
_1397
Position (kb)
1635
1636
1637 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1634.801 kb on + strand, within Pf6N2E2_1394 at 1634.801 kb on + strand, within Pf6N2E2_1394 at 1634.801 kb on + strand, within Pf6N2E2_1394 at 1634.802 kb on - strand, within Pf6N2E2_1394 at 1634.914 kb on + strand, within Pf6N2E2_1394 at 1634.914 kb on + strand, within Pf6N2E2_1394 at 1635.092 kb on - strand, within Pf6N2E2_1394 at 1635.178 kb on + strand, within Pf6N2E2_1394 at 1635.179 kb on - strand, within Pf6N2E2_1394 at 1635.179 kb on - strand, within Pf6N2E2_1394 at 1635.515 kb on + strand at 1635.548 kb on + strand at 1635.784 kb on + strand, within Pf6N2E2_1395 at 1635.784 kb on + strand, within Pf6N2E2_1395 at 1635.784 kb on + strand, within Pf6N2E2_1395 at 1635.785 kb on - strand, within Pf6N2E2_1395 at 1635.785 kb on - strand, within Pf6N2E2_1395 at 1635.785 kb on - strand, within Pf6N2E2_1395 at 1635.910 kb on + strand, within Pf6N2E2_1395 at 1635.910 kb on + strand, within Pf6N2E2_1395 at 1635.910 kb on + strand, within Pf6N2E2_1395 at 1635.910 kb on + strand, within Pf6N2E2_1395 at 1635.910 kb on + strand, within Pf6N2E2_1395 at 1635.911 kb on - strand, within Pf6N2E2_1395 at 1635.911 kb on - strand, within Pf6N2E2_1395 at 1635.911 kb on - strand, within Pf6N2E2_1395 at 1635.911 kb on - strand, within Pf6N2E2_1395 at 1636.084 kb on - strand, within Pf6N2E2_1395 at 1636.196 kb on + strand, within Pf6N2E2_1395 at 1636.303 kb on - strand, within Pf6N2E2_1395 at 1636.482 kb on - strand at 1636.585 kb on - strand at 1636.585 kb on - strand at 1636.704 kb on + strand, within Pf6N2E2_1396 at 1636.704 kb on + strand, within Pf6N2E2_1396 at 1636.705 kb on - strand, within Pf6N2E2_1396 at 1637.450 kb on + strand, within Pf6N2E2_1397 at 1637.450 kb on + strand, within Pf6N2E2_1397 at 1637.450 kb on + strand, within Pf6N2E2_1397 at 1637.450 kb on + strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.451 kb on - strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.468 kb on + strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.469 kb on - strand, within Pf6N2E2_1397 at 1637.470 kb on + strand, within Pf6N2E2_1397 at 1637.470 kb on + strand, within Pf6N2E2_1397 at 1637.471 kb on - strand, within Pf6N2E2_1397
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 1,634,801 + Pf6N2E2_1394 0.37 -1.2 1,634,801 + Pf6N2E2_1394 0.37 -0.5 1,634,801 + Pf6N2E2_1394 0.37 -1.6 1,634,802 - Pf6N2E2_1394 0.37 -1.6 1,634,914 + Pf6N2E2_1394 0.47 -0.7 1,634,914 + Pf6N2E2_1394 0.47 -1.1 1,635,092 - Pf6N2E2_1394 0.62 -1.0 1,635,178 + Pf6N2E2_1394 0.69 -2.4 1,635,179 - Pf6N2E2_1394 0.69 -3.6 1,635,179 - Pf6N2E2_1394 0.69 -0.5 1,635,515 + -0.3 1,635,548 + +0.4 1,635,784 + Pf6N2E2_1395 0.22 -0.1 1,635,784 + Pf6N2E2_1395 0.22 -0.5 1,635,784 + Pf6N2E2_1395 0.22 +0.2 1,635,785 - Pf6N2E2_1395 0.23 -1.7 1,635,785 - Pf6N2E2_1395 0.23 -0.1 1,635,785 - Pf6N2E2_1395 0.23 -0.6 1,635,910 + Pf6N2E2_1395 0.35 -0.9 1,635,910 + Pf6N2E2_1395 0.35 -0.8 1,635,910 + Pf6N2E2_1395 0.35 -1.0 1,635,910 + Pf6N2E2_1395 0.35 -2.0 1,635,910 + Pf6N2E2_1395 0.35 -1.6 1,635,911 - Pf6N2E2_1395 0.35 -2.0 1,635,911 - Pf6N2E2_1395 0.35 -1.5 1,635,911 - Pf6N2E2_1395 0.35 -0.9 1,635,911 - Pf6N2E2_1395 0.35 -3.0 1,636,084 - Pf6N2E2_1395 0.53 -2.1 1,636,196 + Pf6N2E2_1395 0.64 -0.1 1,636,303 - Pf6N2E2_1395 0.75 -0.3 1,636,482 - -0.9 1,636,585 - -1.5 1,636,585 - -0.9 1,636,704 + Pf6N2E2_1396 0.21 -1.3 1,636,704 + Pf6N2E2_1396 0.21 -1.1 1,636,705 - Pf6N2E2_1396 0.21 -0.1 1,637,450 + Pf6N2E2_1397 0.22 -0.8 1,637,450 + Pf6N2E2_1397 0.22 -1.5 1,637,450 + Pf6N2E2_1397 0.22 -0.9 1,637,450 + Pf6N2E2_1397 0.22 -0.6 1,637,451 - Pf6N2E2_1397 0.22 -1.6 1,637,451 - Pf6N2E2_1397 0.22 -0.9 1,637,451 - Pf6N2E2_1397 0.22 +0.1 1,637,451 - Pf6N2E2_1397 0.22 -0.1 1,637,451 - Pf6N2E2_1397 0.22 -1.0 1,637,451 - Pf6N2E2_1397 0.22 -0.8 1,637,451 - Pf6N2E2_1397 0.22 -0.9 1,637,451 - Pf6N2E2_1397 0.22 -1.1 1,637,451 - Pf6N2E2_1397 0.22 -0.5 1,637,451 - Pf6N2E2_1397 0.22 -0.8 1,637,451 - Pf6N2E2_1397 0.22 -0.3 1,637,451 - Pf6N2E2_1397 0.22 +0.6 1,637,468 + Pf6N2E2_1397 0.24 -0.1 1,637,468 + Pf6N2E2_1397 0.24 -0.4 1,637,468 + Pf6N2E2_1397 0.24 -0.2 1,637,468 + Pf6N2E2_1397 0.24 -1.2 1,637,468 + Pf6N2E2_1397 0.24 -2.1 1,637,468 + Pf6N2E2_1397 0.24 -0.3 1,637,468 + Pf6N2E2_1397 0.24 -0.7 1,637,468 + Pf6N2E2_1397 0.24 +0.1 1,637,468 + Pf6N2E2_1397 0.24 -1.3 1,637,468 + Pf6N2E2_1397 0.24 -0.7 1,637,468 + Pf6N2E2_1397 0.24 -1.1 1,637,468 + Pf6N2E2_1397 0.24 +0.6 1,637,469 - Pf6N2E2_1397 0.24 -1.0 1,637,469 - Pf6N2E2_1397 0.24 -1.1 1,637,469 - Pf6N2E2_1397 0.24 -1.8 1,637,469 - Pf6N2E2_1397 0.24 -0.8 1,637,469 - Pf6N2E2_1397 0.24 -1.8 1,637,469 - Pf6N2E2_1397 0.24 -2.8 1,637,469 - Pf6N2E2_1397 0.24 +0.1 1,637,469 - Pf6N2E2_1397 0.24 -2.4 1,637,469 - Pf6N2E2_1397 0.24 -3.2 1,637,469 - Pf6N2E2_1397 0.24 -1.0 1,637,469 - Pf6N2E2_1397 0.24 -1.8 1,637,469 - Pf6N2E2_1397 0.24 -0.7 1,637,470 + Pf6N2E2_1397 0.24 -0.7 1,637,470 + Pf6N2E2_1397 0.24 -1.4 1,637,471 - Pf6N2E2_1397 0.25 -0.8
Or see this region's nucleotide sequence