Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_683 and Pf1N1B4_684 are separated by 197 nucleotides Pf1N1B4_684 and Pf1N1B4_685 overlap by 1 nucleotides
Pf1N1B4_683 - Fumarate hydratase class I, aerobic (EC 4.2.1.2), at 779,742 to 781,265
_683
Pf1N1B4_684 - C4-dicarboxylate transport sensor protein, at 781,463 to 783,265
_684
Pf1N1B4_685 - Nitrogen regulation protein NR(I), at 783,265 to 784,599
_685
Position (kb) 781
782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 780.858 kb on + strand, within Pf1N1B4_683 at 780.858 kb on + strand, within Pf1N1B4_683 at 780.858 kb on + strand, within Pf1N1B4_683 at 780.859 kb on - strand, within Pf1N1B4_683 at 780.861 kb on + strand at 780.861 kb on + strand, within Pf1N1B4_683 at 780.861 kb on + strand, within Pf1N1B4_683 at 780.862 kb on - strand, within Pf1N1B4_683 at 781.068 kb on + strand, within Pf1N1B4_683 at 781.137 kb on + strand at 781.263 kb on + strand at 781.351 kb on + strand at 781.351 kb on + strand at 781.352 kb on + strand at 781.352 kb on - strand at 781.352 kb on - strand at 781.352 kb on - strand at 781.352 kb on - strand at 781.378 kb on + strand at 781.379 kb on - strand at 781.379 kb on - strand at 781.381 kb on - strand at 781.411 kb on - strand at 781.420 kb on - strand at 781.467 kb on + strand at 781.468 kb on - strand at 781.468 kb on - strand at 781.523 kb on - strand at 781.541 kb on + strand at 781.541 kb on + strand at 781.542 kb on - strand at 781.542 kb on - strand at 781.655 kb on + strand, within Pf1N1B4_684 at 781.655 kb on + strand, within Pf1N1B4_684 at 781.655 kb on + strand, within Pf1N1B4_684 at 781.655 kb on + strand, within Pf1N1B4_684 at 781.656 kb on - strand, within Pf1N1B4_684 at 781.656 kb on - strand, within Pf1N1B4_684 at 781.688 kb on + strand, within Pf1N1B4_684 at 781.728 kb on + strand, within Pf1N1B4_684 at 781.887 kb on - strand, within Pf1N1B4_684 at 781.887 kb on - strand, within Pf1N1B4_684 at 781.917 kb on - strand, within Pf1N1B4_684 at 781.988 kb on + strand, within Pf1N1B4_684 at 782.216 kb on + strand at 782.527 kb on - strand, within Pf1N1B4_684 at 782.708 kb on + strand at 782.708 kb on + strand, within Pf1N1B4_684 at 782.709 kb on - strand, within Pf1N1B4_684 at 782.709 kb on - strand, within Pf1N1B4_684 at 783.222 kb on + strand at 783.237 kb on + strand at 783.241 kb on + strand at 783.241 kb on + strand at 783.241 kb on + strand at 783.241 kb on + strand at 783.241 kb on + strand at 783.241 kb on + strand at 783.242 kb on - strand at 783.242 kb on - strand at 783.242 kb on - strand at 783.557 kb on - strand, within Pf1N1B4_685 at 783.965 kb on - strand, within Pf1N1B4_685
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 780,858 + Pf1N1B4_683 0.73 -1.8 780,858 + Pf1N1B4_683 0.73 +0.2 780,858 + Pf1N1B4_683 0.73 -1.9 780,859 - Pf1N1B4_683 0.73 -1.8 780,861 + +0.2 780,861 + Pf1N1B4_683 0.73 +0.6 780,861 + Pf1N1B4_683 0.73 +0.5 780,862 - Pf1N1B4_683 0.73 -0.3 781,068 + Pf1N1B4_683 0.87 +0.7 781,137 + -1.8 781,263 + -0.8 781,351 + +0.1 781,351 + -0.8 781,352 + -0.6 781,352 - +0.9 781,352 - -0.9 781,352 - +0.9 781,352 - -0.3 781,378 + +1.5 781,379 - -0.6 781,379 - -0.3 781,381 - +0.6 781,411 - -0.8 781,420 - +1.6 781,467 + -0.3 781,468 - -2.3 781,468 - -3.6 781,523 - -1.8 781,541 + -0.3 781,541 + -2.3 781,542 - -0.3 781,542 - -3.7 781,655 + Pf1N1B4_684 0.11 -3.2 781,655 + Pf1N1B4_684 0.11 -0.5 781,655 + Pf1N1B4_684 0.11 -1.3 781,655 + Pf1N1B4_684 0.11 -3.0 781,656 - Pf1N1B4_684 0.11 -2.2 781,656 - Pf1N1B4_684 0.11 -2.4 781,688 + Pf1N1B4_684 0.12 -2.8 781,728 + Pf1N1B4_684 0.15 -2.1 781,887 - Pf1N1B4_684 0.24 -1.8 781,887 - Pf1N1B4_684 0.24 -1.6 781,917 - Pf1N1B4_684 0.25 -1.9 781,988 + Pf1N1B4_684 0.29 -0.9 782,216 + -1.1 782,527 - Pf1N1B4_684 0.59 -1.8 782,708 + -1.1 782,708 + Pf1N1B4_684 0.69 -3.0 782,709 - Pf1N1B4_684 0.69 -1.2 782,709 - Pf1N1B4_684 0.69 -1.8 783,222 + -0.3 783,237 + -1.9 783,241 + -1.6 783,241 + -1.6 783,241 + -2.3 783,241 + -1.1 783,241 + +0.2 783,241 + -1.7 783,242 - -0.8 783,242 - -1.1 783,242 - -1.8 783,557 - Pf1N1B4_685 0.22 -1.1 783,965 - Pf1N1B4_685 0.52 -1.8
Or see this region's nucleotide sequence