Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5774

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5772 and Pf1N1B4_5773 are separated by 70 nucleotidesPf1N1B4_5773 and Pf1N1B4_5774 overlap by 4 nucleotidesPf1N1B4_5774 and Pf1N1B4_5775 are separated by 433 nucleotides Pf1N1B4_5772 - Heme d1 biosynthesis protein NirJ, at 208,778 to 209,956 _5772 Pf1N1B4_5773 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 210,027 to 210,866 _5773 Pf1N1B4_5774 - Nitrite reductase associated c-type cytochorome NirN, at 210,863 to 212,356 _5774 Pf1N1B4_5775 - hypothetical protein, at 212,790 to 213,143 _5775 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 210.378 kb on + strand, within Pf1N1B4_5773at 210.579 kb on + strand, within Pf1N1B4_5773at 210.580 kb on - strand, within Pf1N1B4_5773at 211.228 kb on + strand, within Pf1N1B4_5774at 211.229 kb on - strand, within Pf1N1B4_5774at 211.406 kb on + strand, within Pf1N1B4_5774at 211.439 kb on + strand, within Pf1N1B4_5774at 211.439 kb on + strand, within Pf1N1B4_5774at 211.542 kb on - strandat 211.542 kb on - strand, within Pf1N1B4_5774at 211.542 kb on - strand, within Pf1N1B4_5774at 211.793 kb on + strand, within Pf1N1B4_5774at 211.875 kb on + strand, within Pf1N1B4_5774at 211.925 kb on - strand, within Pf1N1B4_5774at 212.218 kb on + strandat 212.249 kb on + strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.310 kb on - strandat 212.310 kb on - strandat 212.310 kb on - strandat 212.310 kb on - strandat 212.403 kb on + strandat 212.660 kb on + strandat 212.740 kb on - strandat 213.251 kb on + strandat 213.251 kb on + strandat 213.324 kb on - strandat 213.324 kb on - strandat 213.327 kb on - strandat 213.349 kb on - strandat 213.349 kb on - strandat 213.352 kb on + strandat 213.352 kb on + strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.353 kb on - strandat 213.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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210,378 + Pf1N1B4_5773 0.42 +0.2
210,579 + Pf1N1B4_5773 0.66 -1.1
210,580 - Pf1N1B4_5773 0.66 -0.2
211,228 + Pf1N1B4_5774 0.24 -0.1
211,229 - Pf1N1B4_5774 0.24 -0.8
211,406 + Pf1N1B4_5774 0.36 -0.6
211,439 + Pf1N1B4_5774 0.39 -1.8
211,439 + Pf1N1B4_5774 0.39 -2.1
211,542 - -1.2
211,542 - Pf1N1B4_5774 0.45 -0.8
211,542 - Pf1N1B4_5774 0.45 -0.6
211,793 + Pf1N1B4_5774 0.62 -1.0
211,875 + Pf1N1B4_5774 0.68 +0.8
211,925 - Pf1N1B4_5774 0.71 -2.7
212,218 + +1.8
212,249 + +0.2
212,309 + +0.8
212,309 + -1.1
212,309 + -1.2
212,309 + +1.1
212,309 + -0.4
212,310 - -1.2
212,310 - -0.6
212,310 - +0.8
212,310 - -0.1
212,403 + -0.2
212,660 + -0.2
212,740 - -0.7
213,251 + -0.2
213,251 + -1.2
213,324 - -0.6
213,324 - +0.4
213,327 - -0.8
213,349 - -0.1
213,349 - -1.7
213,352 + +0.2
213,352 + -0.6
213,353 - +0.2
213,353 - -0.6
213,353 - +0.2
213,353 - +0.2

Or see this region's nucleotide sequence