Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1716

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1715 and Pf1N1B4_1716 are separated by 59 nucleotidesPf1N1B4_1716 and Pf1N1B4_1717 are separated by 453 nucleotides Pf1N1B4_1715 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 1,962,868 to 1,963,800 _1715 Pf1N1B4_1716 - FIG00953394: hypothetical protein, at 1,963,860 to 1,964,441 _1716 Pf1N1B4_1717 - Fatty acid desaturase, at 1,964,895 to 1,965,968 _1717 Position (kb) 1963 1964 1965Strain fitness (log2 ratio) -2 -1 0 1 2at 1962.869 kb on + strandat 1962.869 kb on + strandat 1962.869 kb on + strandat 1962.870 kb on - strandat 1962.870 kb on - strandat 1962.870 kb on - strandat 1962.870 kb on - strandat 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strandat 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.151 kb on + strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.152 kb on - strand, within Pf1N1B4_1715at 1963.166 kb on + strand, within Pf1N1B4_1715at 1963.166 kb on + strand, within Pf1N1B4_1715at 1963.167 kb on - strand, within Pf1N1B4_1715at 1963.167 kb on - strand, within Pf1N1B4_1715at 1963.167 kb on - strand, within Pf1N1B4_1715at 1963.167 kb on - strand, within Pf1N1B4_1715at 1963.167 kb on - strand, within Pf1N1B4_1715at 1963.185 kb on + strandat 1963.238 kb on + strand, within Pf1N1B4_1715at 1963.238 kb on + strand, within Pf1N1B4_1715at 1963.239 kb on - strand, within Pf1N1B4_1715at 1963.239 kb on - strand, within Pf1N1B4_1715at 1963.239 kb on - strand, within Pf1N1B4_1715at 1963.239 kb on - strand, within Pf1N1B4_1715at 1963.244 kb on + strand, within Pf1N1B4_1715at 1963.244 kb on + strand, within Pf1N1B4_1715at 1963.245 kb on - strand, within Pf1N1B4_1715at 1963.315 kb on + strand, within Pf1N1B4_1715at 1963.315 kb on + strand, within Pf1N1B4_1715at 1963.315 kb on + strand, within Pf1N1B4_1715at 1963.315 kb on + strand, within Pf1N1B4_1715at 1963.315 kb on + strand, within Pf1N1B4_1715at 1963.316 kb on - strand, within Pf1N1B4_1715at 1963.316 kb on - strand, within Pf1N1B4_1715at 1963.316 kb on - strand, within Pf1N1B4_1715at 1963.316 kb on - strand, within Pf1N1B4_1715at 1963.427 kb on + strand, within Pf1N1B4_1715at 1963.428 kb on - strand, within Pf1N1B4_1715at 1963.428 kb on - strand, within Pf1N1B4_1715at 1963.428 kb on - strand, within Pf1N1B4_1715at 1963.487 kb on + strand, within Pf1N1B4_1715at 1963.487 kb on + strand, within Pf1N1B4_1715at 1963.488 kb on - strand, within Pf1N1B4_1715at 1963.488 kb on - strand, within Pf1N1B4_1715at 1963.488 kb on - strand, within Pf1N1B4_1715at 1963.488 kb on - strand, within Pf1N1B4_1715at 1963.526 kb on + strand, within Pf1N1B4_1715at 1963.527 kb on - strand, within Pf1N1B4_1715at 1963.527 kb on - strand, within Pf1N1B4_1715at 1963.527 kb on - strand, within Pf1N1B4_1715at 1963.852 kb on + strandat 1963.906 kb on + strandat 1963.913 kb on - strandat 1963.913 kb on - strandat 1964.000 kb on + strand, within Pf1N1B4_1716at 1964.000 kb on + strand, within Pf1N1B4_1716at 1964.000 kb on + strand, within Pf1N1B4_1716at 1964.001 kb on - strand, within Pf1N1B4_1716at 1964.001 kb on - strand, within Pf1N1B4_1716at 1964.001 kb on - strand, within Pf1N1B4_1716at 1964.001 kb on - strand, within Pf1N1B4_1716at 1964.480 kb on + strandat 1964.480 kb on + strandat 1964.481 kb on - strandat 1964.481 kb on - strandat 1964.482 kb on + strandat 1964.482 kb on + strandat 1964.482 kb on + strandat 1964.482 kb on + strandat 1964.482 kb on + strandat 1964.482 kb on + strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.483 kb on - strandat 1964.511 kb on + strandat 1964.612 kb on + strandat 1964.622 kb on - strandat 1964.653 kb on + strandat 1964.654 kb on - strandat 1964.889 kb on - strandat 1965.043 kb on + strand, within Pf1N1B4_1717at 1965.043 kb on + strand, within Pf1N1B4_1717at 1965.044 kb on - strand, within Pf1N1B4_1717at 1965.044 kb on - strand, within Pf1N1B4_1717at 1965.181 kb on + strand, within Pf1N1B4_1717at 1965.182 kb on - strandat 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.182 kb on - strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.184 kb on + strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.185 kb on - strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.221 kb on + strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.222 kb on - strand, within Pf1N1B4_1717at 1965.288 kb on - strand, within Pf1N1B4_1717at 1965.288 kb on - strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.361 kb on + strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.362 kb on - strand, within Pf1N1B4_1717at 1965.397 kb on + strand, within Pf1N1B4_1717

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
1,962,869 + -0.3
1,962,869 + -0.1
1,962,869 + -0.3
1,962,870 - +0.4
1,962,870 - -0.5
1,962,870 - +0.8
1,962,870 - -0.1
1,963,151 + Pf1N1B4_1715 0.30 +0.7
1,963,151 + Pf1N1B4_1715 0.30 -0.2
1,963,151 + Pf1N1B4_1715 0.30 -1.2
1,963,151 + +1.1
1,963,151 + Pf1N1B4_1715 0.30 -0.0
1,963,151 + Pf1N1B4_1715 0.30 +1.7
1,963,151 + Pf1N1B4_1715 0.30 -0.1
1,963,151 + Pf1N1B4_1715 0.30 +1.0
1,963,152 - Pf1N1B4_1715 0.30 -0.1
1,963,152 - Pf1N1B4_1715 0.30 -0.4
1,963,152 - Pf1N1B4_1715 0.30 +0.6
1,963,152 - Pf1N1B4_1715 0.30 +0.3
1,963,152 - Pf1N1B4_1715 0.30 -0.7
1,963,152 - Pf1N1B4_1715 0.30 +0.2
1,963,152 - Pf1N1B4_1715 0.30 +1.3
1,963,152 - Pf1N1B4_1715 0.30 -0.9
1,963,152 - Pf1N1B4_1715 0.30 +0.9
1,963,166 + Pf1N1B4_1715 0.32 +1.7
1,963,166 + Pf1N1B4_1715 0.32 -2.2
1,963,167 - Pf1N1B4_1715 0.32 -0.2
1,963,167 - Pf1N1B4_1715 0.32 -0.2
1,963,167 - Pf1N1B4_1715 0.32 +1.3
1,963,167 - Pf1N1B4_1715 0.32 +1.5
1,963,167 - Pf1N1B4_1715 0.32 -1.2
1,963,185 + -0.3
1,963,238 + Pf1N1B4_1715 0.40 +0.3
1,963,238 + Pf1N1B4_1715 0.40 -1.3
1,963,239 - Pf1N1B4_1715 0.40 -1.6
1,963,239 - Pf1N1B4_1715 0.40 +0.5
1,963,239 - Pf1N1B4_1715 0.40 -1.0
1,963,239 - Pf1N1B4_1715 0.40 +0.7
1,963,244 + Pf1N1B4_1715 0.40 +0.2
1,963,244 + Pf1N1B4_1715 0.40 +1.7
1,963,245 - Pf1N1B4_1715 0.40 -1.3
1,963,315 + Pf1N1B4_1715 0.48 -0.1
1,963,315 + Pf1N1B4_1715 0.48 -1.1
1,963,315 + Pf1N1B4_1715 0.48 -0.0
1,963,315 + Pf1N1B4_1715 0.48 +0.7
1,963,315 + Pf1N1B4_1715 0.48 +0.1
1,963,316 - Pf1N1B4_1715 0.48 +0.2
1,963,316 - Pf1N1B4_1715 0.48 +0.7
1,963,316 - Pf1N1B4_1715 0.48 -0.1
1,963,316 - Pf1N1B4_1715 0.48 +0.3
1,963,427 + Pf1N1B4_1715 0.60 +0.7
1,963,428 - Pf1N1B4_1715 0.60 -0.7
1,963,428 - Pf1N1B4_1715 0.60 +0.1
1,963,428 - Pf1N1B4_1715 0.60 +0.4
1,963,487 + Pf1N1B4_1715 0.66 -1.3
1,963,487 + Pf1N1B4_1715 0.66 -0.1
1,963,488 - Pf1N1B4_1715 0.66 +0.4
1,963,488 - Pf1N1B4_1715 0.66 +0.5
1,963,488 - Pf1N1B4_1715 0.66 +0.8
1,963,488 - Pf1N1B4_1715 0.66 -1.7
1,963,526 + Pf1N1B4_1715 0.71 -1.0
1,963,527 - Pf1N1B4_1715 0.71 +0.4
1,963,527 - Pf1N1B4_1715 0.71 -0.3
1,963,527 - Pf1N1B4_1715 0.71 -0.9
1,963,852 + +0.3
1,963,906 + +0.9
1,963,913 - -0.8
1,963,913 - +1.2
1,964,000 + Pf1N1B4_1716 0.24 -2.0
1,964,000 + Pf1N1B4_1716 0.24 -0.0
1,964,000 + Pf1N1B4_1716 0.24 -2.0
1,964,001 - Pf1N1B4_1716 0.24 -1.1
1,964,001 - Pf1N1B4_1716 0.24 +1.2
1,964,001 - Pf1N1B4_1716 0.24 -1.2
1,964,001 - Pf1N1B4_1716 0.24 -0.3
1,964,480 + +1.3
1,964,480 + -0.2
1,964,481 - +0.1
1,964,481 - +1.7
1,964,482 + +1.1
1,964,482 + +0.8
1,964,482 + -1.7
1,964,482 + +0.2
1,964,482 + +0.5
1,964,482 + -1.2
1,964,483 - +0.7
1,964,483 - -2.1
1,964,483 - -0.4
1,964,483 - -0.7
1,964,483 - -0.1
1,964,483 - +0.3
1,964,483 - -0.4
1,964,483 - +0.7
1,964,483 - -0.3
1,964,483 - +1.1
1,964,483 - -0.5
1,964,483 - -0.7
1,964,483 - +0.2
1,964,483 - -0.7
1,964,511 + +0.7
1,964,612 + -0.7
1,964,622 - -1.1
1,964,653 + -0.2
1,964,654 - -0.7
1,964,889 - +0.4
1,965,043 + Pf1N1B4_1717 0.14 +1.7
1,965,043 + Pf1N1B4_1717 0.14 +0.2
1,965,044 - Pf1N1B4_1717 0.14 -0.6
1,965,044 - Pf1N1B4_1717 0.14 +1.5
1,965,181 + Pf1N1B4_1717 0.27 +1.3
1,965,182 - +2.3
1,965,182 - Pf1N1B4_1717 0.27 +0.8
1,965,182 - Pf1N1B4_1717 0.27 -1.9
1,965,182 - Pf1N1B4_1717 0.27 +0.9
1,965,184 + Pf1N1B4_1717 0.27 +0.7
1,965,184 + Pf1N1B4_1717 0.27 -0.7
1,965,184 + Pf1N1B4_1717 0.27 -1.5
1,965,184 + Pf1N1B4_1717 0.27 +0.3
1,965,184 + Pf1N1B4_1717 0.27 -0.3
1,965,185 - Pf1N1B4_1717 0.27 +0.3
1,965,185 - Pf1N1B4_1717 0.27 -0.3
1,965,185 - Pf1N1B4_1717 0.27 -0.0
1,965,185 - Pf1N1B4_1717 0.27 -0.0
1,965,185 - Pf1N1B4_1717 0.27 +0.8
1,965,185 - Pf1N1B4_1717 0.27 +2.0
1,965,185 - Pf1N1B4_1717 0.27 +1.1
1,965,185 - Pf1N1B4_1717 0.27 +1.0
1,965,185 - Pf1N1B4_1717 0.27 +0.1
1,965,221 + Pf1N1B4_1717 0.30 +0.3
1,965,221 + Pf1N1B4_1717 0.30 +2.3
1,965,221 + Pf1N1B4_1717 0.30 -1.6
1,965,222 - Pf1N1B4_1717 0.30 +1.8
1,965,222 - Pf1N1B4_1717 0.30 -0.2
1,965,222 - Pf1N1B4_1717 0.30 +1.2
1,965,222 - Pf1N1B4_1717 0.30 -0.7
1,965,222 - Pf1N1B4_1717 0.30 +0.7
1,965,288 - Pf1N1B4_1717 0.37 -0.5
1,965,288 - Pf1N1B4_1717 0.37 -0.7
1,965,361 + Pf1N1B4_1717 0.43 +1.3
1,965,361 + Pf1N1B4_1717 0.43 -0.3
1,965,361 + Pf1N1B4_1717 0.43 +1.3
1,965,361 + Pf1N1B4_1717 0.43 -1.4
1,965,361 + Pf1N1B4_1717 0.43 -0.2
1,965,362 - Pf1N1B4_1717 0.43 -0.5
1,965,362 - Pf1N1B4_1717 0.43 +2.0
1,965,362 - Pf1N1B4_1717 0.43 -0.1
1,965,397 + Pf1N1B4_1717 0.47 +0.0

Or see this region's nucleotide sequence