Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03338 and CCNA_03339 overlap by 4 nucleotides CCNA_03339 and CCNA_03340 are separated by 7 nucleotides CCNA_03340 and CCNA_03341 are separated by 4 nucleotides CCNA_03341 and CCNA_03342 are separated by 114 nucleotides
CCNA_03338: CCNA_03338 - TolB protein, at 3,519,403 to 3,520,734
_03338
CCNA_03339: CCNA_03339 - TolA protein, at 3,520,731 to 3,521,543
_03339
CCNA_03340: CCNA_03340 - TolR protein, at 3,521,551 to 3,522,069
_03340
CCNA_03341: CCNA_03341 - TolQ protein, at 3,522,074 to 3,522,772
_03341
CCNA_03342: CCNA_03342 - short-chain acyl-CoA hydrolase, at 3,522,887 to 3,523,330
_03342
Position (kb)
3521
3522
3523 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3520.688 kb on + strand at 3520.688 kb on + strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3520.696 kb on - strand at 3521.509 kb on + strand at 3521.574 kb on - strand at 3521.587 kb on - strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.072 kb on + strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.080 kb on - strand at 3522.095 kb on + strand at 3522.785 kb on + strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.793 kb on - strand at 3522.803 kb on - strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.804 kb on + strand at 3522.809 kb on + strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.812 kb on - strand at 3522.824 kb on - strand at 3522.893 kb on - strand at 3522.918 kb on + strand at 3522.918 kb on + strand at 3522.920 kb on - strand at 3522.932 kb on + strand, within CCNA_03342 at 3522.960 kb on - strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.964 kb on + strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.972 kb on - strand, within CCNA_03342 at 3522.990 kb on + strand, within CCNA_03342 at 3522.998 kb on - strand, within CCNA_03342 at 3523.003 kb on + strand, within CCNA_03342 at 3523.003 kb on - strand, within CCNA_03342 at 3523.011 kb on - strand, within CCNA_03342 at 3523.056 kb on + strand, within CCNA_03342
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 3,520,688 + -3.0 3,520,688 + +0.6 3,520,696 - -0.4 3,520,696 - +0.9 3,520,696 - -0.1 3,521,509 + -1.6 3,521,574 - -0.2 3,521,587 - -1.4 3,522,072 + -2.0 3,522,072 + -1.1 3,522,072 + +0.2 3,522,072 + -2.8 3,522,072 + +0.5 3,522,072 + -0.7 3,522,072 + -0.9 3,522,072 + -1.1 3,522,072 + +0.1 3,522,072 + +0.4 3,522,072 + -2.1 3,522,080 - +0.2 3,522,080 - +1.7 3,522,080 - +1.2 3,522,080 - -0.4 3,522,080 - +1.0 3,522,080 - +0.2 3,522,080 - +1.2 3,522,080 - +0.8 3,522,080 - +0.3 3,522,080 - -0.2 3,522,080 - +0.6 3,522,095 + -3.0 3,522,785 + -1.0 3,522,793 - -0.1 3,522,793 - -2.7 3,522,793 - -0.2 3,522,793 - +0.3 3,522,803 - -0.9 3,522,804 + -2.0 3,522,804 + -0.9 3,522,804 + -0.7 3,522,804 + -2.6 3,522,809 + -1.0 3,522,812 - -3.1 3,522,812 - -0.4 3,522,812 - -1.2 3,522,812 - -0.5 3,522,812 - -0.7 3,522,812 - -0.9 3,522,812 - -3.3 3,522,812 - -1.9 3,522,812 - -0.2 3,522,812 - -0.5 3,522,812 - -2.0 3,522,812 - -0.9 3,522,812 - -1.3 3,522,824 - +1.1 3,522,893 - -0.5 3,522,918 + +0.1 3,522,918 + -0.8 3,522,920 - +0.1 3,522,932 + CCNA_03342 0.10 -0.1 3,522,960 - CCNA_03342 0.16 +0.6 3,522,964 + CCNA_03342 0.17 +0.8 3,522,964 + CCNA_03342 0.17 -0.2 3,522,964 + CCNA_03342 0.17 -0.4 3,522,972 - CCNA_03342 0.19 -0.3 3,522,972 - CCNA_03342 0.19 -0.2 3,522,972 - CCNA_03342 0.19 -1.2 3,522,972 - CCNA_03342 0.19 -0.5 3,522,990 + CCNA_03342 0.23 -0.7 3,522,998 - CCNA_03342 0.25 +0.6 3,523,003 + CCNA_03342 0.26 -1.2 3,523,003 - CCNA_03342 0.26 -0.7 3,523,011 - CCNA_03342 0.28 +2.3 3,523,056 + CCNA_03342 0.38 -1.7
Or see this region's nucleotide sequence