Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02137 and CCNA_02138 are separated by 9 nucleotides CCNA_02138 and CCNA_02139 overlap by 4 nucleotides CCNA_02139 and CCNA_02140 overlap by 4 nucleotides
CCNA_02137: CCNA_02137 - endoglucanase H, at 2,294,518 to 2,297,394
_02137
CCNA_02138: CCNA_02138 - hypothetical protein, at 2,297,404 to 2,298,198
_02138
CCNA_02139: CCNA_02139 - polar flagellum positioning protein pflI, at 2,298,195 to 2,298,779
_02139
CCNA_02140: CCNA_02140 - flagellar motor switch protein fliM, at 2,298,776 to 2,299,900
_02140
Position (kb)
2298
2299 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2297.199 kb on - strand at 2297.199 kb on - strand at 2297.199 kb on - strand at 2297.199 kb on - strand at 2297.244 kb on - strand at 2297.364 kb on + strand at 2297.389 kb on + strand at 2297.398 kb on - strand at 2297.401 kb on + strand at 2297.401 kb on + strand at 2297.401 kb on + strand at 2297.408 kb on - strand at 2297.409 kb on - strand at 2297.409 kb on - strand at 2297.409 kb on - strand at 2297.516 kb on + strand, within CCNA_02138 at 2297.522 kb on + strand, within CCNA_02138 at 2297.530 kb on - strand, within CCNA_02138 at 2297.592 kb on - strand, within CCNA_02138 at 2297.597 kb on - strand at 2297.629 kb on - strand, within CCNA_02138 at 2297.657 kb on - strand, within CCNA_02138 at 2297.657 kb on - strand, within CCNA_02138 at 2297.661 kb on - strand, within CCNA_02138 at 2297.668 kb on - strand, within CCNA_02138 at 2297.698 kb on - strand, within CCNA_02138 at 2297.758 kb on - strand, within CCNA_02138 at 2297.785 kb on + strand, within CCNA_02138 at 2297.793 kb on - strand, within CCNA_02138 at 2297.802 kb on - strand, within CCNA_02138 at 2297.853 kb on + strand, within CCNA_02138 at 2297.858 kb on + strand, within CCNA_02138 at 2297.866 kb on - strand, within CCNA_02138 at 2297.891 kb on - strand, within CCNA_02138 at 2297.905 kb on + strand, within CCNA_02138 at 2297.938 kb on - strand, within CCNA_02138 at 2297.978 kb on - strand, within CCNA_02138 at 2297.980 kb on - strand, within CCNA_02138 at 2297.980 kb on - strand, within CCNA_02138 at 2297.980 kb on - strand, within CCNA_02138 at 2298.053 kb on + strand, within CCNA_02138 at 2298.082 kb on + strand, within CCNA_02138 at 2298.090 kb on - strand, within CCNA_02138 at 2298.127 kb on - strand at 2298.147 kb on - strand at 2298.230 kb on - strand at 2298.262 kb on + strand, within CCNA_02139 at 2298.270 kb on - strand, within CCNA_02139 at 2298.302 kb on + strand, within CCNA_02139 at 2298.302 kb on + strand, within CCNA_02139 at 2298.310 kb on - strand, within CCNA_02139 at 2298.310 kb on - strand, within CCNA_02139 at 2298.357 kb on - strand, within CCNA_02139 at 2298.363 kb on - strand, within CCNA_02139 at 2298.481 kb on + strand, within CCNA_02139 at 2298.481 kb on + strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.489 kb on - strand, within CCNA_02139 at 2298.537 kb on + strand, within CCNA_02139 at 2298.542 kb on + strand, within CCNA_02139 at 2298.545 kb on - strand, within CCNA_02139 at 2298.600 kb on - strand, within CCNA_02139 at 2298.617 kb on - strand, within CCNA_02139 at 2298.652 kb on + strand, within CCNA_02139 at 2298.665 kb on + strand, within CCNA_02139 at 2298.665 kb on - strand, within CCNA_02139 at 2298.671 kb on - strand, within CCNA_02139 at 2298.693 kb on - strand, within CCNA_02139 at 2298.712 kb on - strand, within CCNA_02139 at 2298.719 kb on - strand, within CCNA_02139 at 2298.753 kb on + strand at 2298.754 kb on + strand at 2298.761 kb on - strand at 2298.795 kb on + strand at 2298.803 kb on - strand at 2298.830 kb on - strand at 2298.888 kb on - strand at 2298.928 kb on + strand, within CCNA_02140 at 2299.017 kb on + strand, within CCNA_02140 at 2299.017 kb on + strand, within CCNA_02140 at 2299.052 kb on - strand, within CCNA_02140 at 2299.052 kb on - strand, within CCNA_02140 at 2299.052 kb on - strand, within CCNA_02140 at 2299.052 kb on - strand, within CCNA_02140 at 2299.074 kb on + strand, within CCNA_02140 at 2299.114 kb on + strand, within CCNA_02140 at 2299.115 kb on - strand, within CCNA_02140 at 2299.119 kb on + strand, within CCNA_02140 at 2299.135 kb on + strand, within CCNA_02140 at 2299.191 kb on - strand, within CCNA_02140 at 2299.291 kb on - strand, within CCNA_02140 at 2299.349 kb on - strand, within CCNA_02140 at 2299.349 kb on - strand, within CCNA_02140 at 2299.349 kb on - strand, within CCNA_02140 at 2299.397 kb on - strand, within CCNA_02140 at 2299.428 kb on - strand, within CCNA_02140 at 2299.439 kb on - strand, within CCNA_02140 at 2299.509 kb on - strand, within CCNA_02140 at 2299.509 kb on - strand, within CCNA_02140 at 2299.535 kb on - strand, within CCNA_02140 at 2299.545 kb on - strand, within CCNA_02140 at 2299.546 kb on - strand, within CCNA_02140 at 2299.569 kb on + strand, within CCNA_02140 at 2299.723 kb on - strand, within CCNA_02140 at 2299.731 kb on + strand, within CCNA_02140
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,297,199 - +1.0 2,297,199 - +0.7 2,297,199 - +0.7 2,297,199 - -1.0 2,297,244 - -0.0 2,297,364 + -0.2 2,297,389 + -1.9 2,297,398 - +0.2 2,297,401 + -0.5 2,297,401 + -1.2 2,297,401 + +0.9 2,297,408 - +0.5 2,297,409 - +0.5 2,297,409 - -0.3 2,297,409 - +1.1 2,297,516 + CCNA_02138 0.14 +0.3 2,297,522 + CCNA_02138 0.15 -0.1 2,297,530 - CCNA_02138 0.16 +0.8 2,297,592 - CCNA_02138 0.24 +2.0 2,297,597 - +1.4 2,297,629 - CCNA_02138 0.28 +1.6 2,297,657 - CCNA_02138 0.32 +1.8 2,297,657 - CCNA_02138 0.32 +2.0 2,297,661 - CCNA_02138 0.32 +1.8 2,297,668 - CCNA_02138 0.33 +1.5 2,297,698 - CCNA_02138 0.37 +1.5 2,297,758 - CCNA_02138 0.45 +1.9 2,297,785 + CCNA_02138 0.48 -1.1 2,297,793 - CCNA_02138 0.49 -1.1 2,297,802 - CCNA_02138 0.50 +1.4 2,297,853 + CCNA_02138 0.56 -2.1 2,297,858 + CCNA_02138 0.57 +2.2 2,297,866 - CCNA_02138 0.58 +1.0 2,297,891 - CCNA_02138 0.61 +1.8 2,297,905 + CCNA_02138 0.63 -0.7 2,297,938 - CCNA_02138 0.67 +2.0 2,297,978 - CCNA_02138 0.72 +1.3 2,297,980 - CCNA_02138 0.72 +2.6 2,297,980 - CCNA_02138 0.72 +1.9 2,297,980 - CCNA_02138 0.72 +2.1 2,298,053 + CCNA_02138 0.82 -1.2 2,298,082 + CCNA_02138 0.85 +0.9 2,298,090 - CCNA_02138 0.86 +1.9 2,298,127 - +2.0 2,298,147 - +1.5 2,298,230 - +1.1 2,298,262 + CCNA_02139 0.11 -0.2 2,298,270 - CCNA_02139 0.13 +0.8 2,298,302 + CCNA_02139 0.18 -0.4 2,298,302 + CCNA_02139 0.18 -0.7 2,298,310 - CCNA_02139 0.20 +1.4 2,298,310 - CCNA_02139 0.20 +1.1 2,298,357 - CCNA_02139 0.28 +0.9 2,298,363 - CCNA_02139 0.29 +1.3 2,298,481 + CCNA_02139 0.49 -0.2 2,298,481 + CCNA_02139 0.49 -1.8 2,298,489 - CCNA_02139 0.50 +1.1 2,298,489 - CCNA_02139 0.50 +1.1 2,298,537 + CCNA_02139 0.58 +0.2 2,298,542 + CCNA_02139 0.59 +0.6 2,298,545 - CCNA_02139 0.60 +1.2 2,298,600 - CCNA_02139 0.69 +1.6 2,298,617 - CCNA_02139 0.72 +1.4 2,298,652 + CCNA_02139 0.78 -2.3 2,298,665 + CCNA_02139 0.80 -2.6 2,298,665 - CCNA_02139 0.80 +1.2 2,298,671 - CCNA_02139 0.81 +1.9 2,298,693 - CCNA_02139 0.85 +1.3 2,298,712 - CCNA_02139 0.88 +1.4 2,298,719 - CCNA_02139 0.90 +0.9 2,298,753 + -0.8 2,298,754 + -1.3 2,298,761 - +0.5 2,298,795 + -2.0 2,298,803 - +1.3 2,298,830 - +1.5 2,298,888 - +1.9 2,298,928 + CCNA_02140 0.14 -1.9 2,299,017 + CCNA_02140 0.21 -1.1 2,299,017 + CCNA_02140 0.21 -1.7 2,299,052 - CCNA_02140 0.25 +1.7 2,299,052 - CCNA_02140 0.25 +2.1 2,299,052 - CCNA_02140 0.25 +2.0 2,299,052 - CCNA_02140 0.25 +2.6 2,299,074 + CCNA_02140 0.26 -1.7 2,299,114 + CCNA_02140 0.30 +0.1 2,299,115 - CCNA_02140 0.30 +1.2 2,299,119 + CCNA_02140 0.30 -1.5 2,299,135 + CCNA_02140 0.32 -1.2 2,299,191 - CCNA_02140 0.37 +2.5 2,299,291 - CCNA_02140 0.46 +1.0 2,299,349 - CCNA_02140 0.51 +2.0 2,299,349 - CCNA_02140 0.51 +1.7 2,299,349 - CCNA_02140 0.51 +1.1 2,299,397 - CCNA_02140 0.55 +1.5 2,299,428 - CCNA_02140 0.58 +2.2 2,299,439 - CCNA_02140 0.59 +1.6 2,299,509 - CCNA_02140 0.65 +2.3 2,299,509 - CCNA_02140 0.65 +1.7 2,299,535 - CCNA_02140 0.67 +3.1 2,299,545 - CCNA_02140 0.68 +2.0 2,299,546 - CCNA_02140 0.68 +1.5 2,299,569 + CCNA_02140 0.70 -1.8 2,299,723 - CCNA_02140 0.84 +2.1 2,299,731 + CCNA_02140 0.85 +0.9
Or see this region's nucleotide sequence