Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00404

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00403 and CCNA_00404 overlap by 1 nucleotidesCCNA_00404 and CCNA_00405 overlap by 4 nucleotidesCCNA_00405 and CCNA_00406 are separated by 101 nucleotides CCNA_00403: CCNA_00403 - short chain dehydrogenase, at 419,728 to 420,699 _00403 CCNA_00404: CCNA_00404 - hypothetical protein, at 420,699 to 421,214 _00404 CCNA_00405: CCNA_00405 - short chain dehydrogenase, at 421,211 to 422,068 _00405 CCNA_00406: CCNA_00406 - DNA transformation protein tfoX, at 422,170 to 422,538 _00406 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 419.762 kb on + strandat 419.819 kb on + strandat 419.852 kb on - strand, within CCNA_00403at 419.861 kb on + strand, within CCNA_00403at 419.866 kb on + strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.869 kb on - strand, within CCNA_00403at 419.873 kb on - strand, within CCNA_00403at 419.874 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.911 kb on - strand, within CCNA_00403at 419.913 kb on + strand, within CCNA_00403at 419.966 kb on + strand, within CCNA_00403at 419.985 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.990 kb on + strand, within CCNA_00403at 419.998 kb on - strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.018 kb on + strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.026 kb on - strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.064 kb on + strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.072 kb on - strand, within CCNA_00403at 420.074 kb on + strand, within CCNA_00403at 420.119 kb on - strand, within CCNA_00403at 420.134 kb on + strand, within CCNA_00403at 420.255 kb on - strand, within CCNA_00403at 420.261 kb on + strandat 420.266 kb on + strand, within CCNA_00403at 420.296 kb on + strand, within CCNA_00403at 420.301 kb on + strand, within CCNA_00403at 420.303 kb on - strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.306 kb on + strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.314 kb on - strand, within CCNA_00403at 420.317 kb on + strand, within CCNA_00403at 420.346 kb on - strand, within CCNA_00403at 420.358 kb on - strand, within CCNA_00403at 420.365 kb on - strand, within CCNA_00403at 420.380 kb on + strand, within CCNA_00403at 420.400 kb on - strand, within CCNA_00403at 420.405 kb on - strand, within CCNA_00403at 420.428 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.442 kb on + strand, within CCNA_00403at 420.450 kb on - strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.481 kb on + strand, within CCNA_00403at 420.483 kb on + strand, within CCNA_00403at 420.504 kb on - strand, within CCNA_00403at 420.515 kb on + strand, within CCNA_00403at 420.516 kb on + strand, within CCNA_00403at 420.524 kb on - strand, within CCNA_00403at 420.558 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.563 kb on + strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.571 kb on - strand, within CCNA_00403at 420.583 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.588 kb on + strand, within CCNA_00403at 420.591 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.596 kb on - strand, within CCNA_00403at 420.611 kb on + strandat 420.614 kb on - strandat 420.639 kb on - strandat 420.640 kb on - strandat 420.665 kb on - strandat 420.702 kb on - strandat 420.707 kb on + strandat 420.738 kb on + strandat 420.743 kb on + strandat 420.751 kb on - strand, within CCNA_00404at 420.754 kb on - strand, within CCNA_00404at 420.810 kb on + strand, within CCNA_00404at 420.827 kb on + strand, within CCNA_00404at 420.861 kb on - strand, within CCNA_00404at 420.874 kb on - strand, within CCNA_00404at 420.874 kb on - strand, within CCNA_00404at 420.898 kb on + strand, within CCNA_00404at 420.975 kb on + strand, within CCNA_00404at 421.016 kb on + strand, within CCNA_00404at 421.024 kb on - strand, within CCNA_00404at 421.024 kb on - strand, within CCNA_00404at 421.039 kb on - strand, within CCNA_00404at 421.073 kb on - strand, within CCNA_00404at 421.114 kb on - strand, within CCNA_00404at 421.124 kb on - strand, within CCNA_00404at 421.142 kb on + strand, within CCNA_00404at 421.162 kb on + strand, within CCNA_00404at 421.177 kb on + strandat 421.177 kb on + strandat 421.185 kb on - strandat 421.187 kb on + strandat 421.195 kb on + strandat 421.205 kb on + strandat 421.214 kb on + strandat 421.230 kb on - strandat 421.257 kb on + strandat 421.262 kb on + strandat 421.265 kb on - strandat 421.265 kb on - strandat 421.267 kb on + strandat 421.270 kb on - strandat 421.286 kb on + strandat 421.309 kb on + strand, within CCNA_00405at 421.320 kb on + strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.333 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.353 kb on - strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.354 kb on + strand, within CCNA_00405at 421.362 kb on - strand, within CCNA_00405at 421.392 kb on + strand, within CCNA_00405at 421.424 kb on + strand, within CCNA_00405at 421.429 kb on + strand, within CCNA_00405at 421.437 kb on - strand, within CCNA_00405at 421.458 kb on - strand, within CCNA_00405at 421.471 kb on - strand, within CCNA_00405at 421.516 kb on + strand, within CCNA_00405at 421.518 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.523 kb on + strand, within CCNA_00405at 421.545 kb on + strand, within CCNA_00405at 421.567 kb on - strand, within CCNA_00405at 421.597 kb on + strand, within CCNA_00405at 421.598 kb on - strand, within CCNA_00405at 421.610 kb on + strand, within CCNA_00405at 421.627 kb on + strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.646 kb on - strand, within CCNA_00405at 421.660 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.694 kb on + strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.702 kb on - strand, within CCNA_00405at 421.735 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.742 kb on + strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.743 kb on - strand, within CCNA_00405at 421.750 kb on + strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.758 kb on - strand, within CCNA_00405at 421.826 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.831 kb on - strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.862 kb on + strand, within CCNA_00405at 421.867 kb on + strand, within CCNA_00405at 421.870 kb on - strand, within CCNA_00405at 421.883 kb on + strand, within CCNA_00405at 421.912 kb on + strand, within CCNA_00405at 421.971 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.981 kb on + strand, within CCNA_00405at 421.989 kb on - strandat 422.035 kb on - strandat 422.068 kb on + strandat 422.085 kb on - strandat 422.092 kb on + strandat 422.100 kb on - strandat 422.101 kb on - strandat 422.101 kb on - strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.113 kb on + strandat 422.186 kb on - strandat 422.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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419,762 + -0.9
419,819 + +1.8
419,852 - CCNA_00403 0.13 -3.2
419,861 + CCNA_00403 0.14 -0.6
419,866 + CCNA_00403 0.14 +0.5
419,869 - CCNA_00403 0.15 -0.8
419,869 - CCNA_00403 0.15 -2.1
419,873 - CCNA_00403 0.15 -1.9
419,874 - CCNA_00403 0.15 -2.6
419,911 - CCNA_00403 0.19 -3.0
419,911 - CCNA_00403 0.19 -1.1
419,911 - CCNA_00403 0.19 -0.3
419,911 - CCNA_00403 0.19 -0.9
419,913 + CCNA_00403 0.19 -1.1
419,966 + CCNA_00403 0.24 -1.9
419,985 + CCNA_00403 0.26 -3.4
419,990 + CCNA_00403 0.27 +0.3
419,990 + CCNA_00403 0.27 -0.5
419,990 + CCNA_00403 0.27 -0.9
419,998 - CCNA_00403 0.28 -1.3
420,018 + CCNA_00403 0.30 +1.8
420,018 + CCNA_00403 0.30 +0.1
420,018 + CCNA_00403 0.30 -0.0
420,018 + CCNA_00403 0.30 -0.6
420,018 + CCNA_00403 0.30 -0.8
420,026 - CCNA_00403 0.31 +0.5
420,026 - CCNA_00403 0.31 -2.1
420,064 + CCNA_00403 0.35 -0.1
420,064 + CCNA_00403 0.35 -0.1
420,064 + CCNA_00403 0.35 +0.8
420,064 + CCNA_00403 0.35 -0.3
420,072 - CCNA_00403 0.35 -1.4
420,072 - CCNA_00403 0.35 -1.5
420,072 - CCNA_00403 0.35 +0.2
420,074 + CCNA_00403 0.36 +1.0
420,119 - CCNA_00403 0.40 -0.1
420,134 + CCNA_00403 0.42 +0.2
420,255 - CCNA_00403 0.54 -1.3
420,261 + +1.5
420,266 + CCNA_00403 0.55 -2.0
420,296 + CCNA_00403 0.58 +0.2
420,301 + CCNA_00403 0.59 +0.2
420,303 - CCNA_00403 0.59 +0.4
420,306 + CCNA_00403 0.59 -1.1
420,306 + CCNA_00403 0.59 +1.1
420,306 + CCNA_00403 0.59 -0.3
420,306 + CCNA_00403 0.59 -0.8
420,314 - CCNA_00403 0.60 -0.2
420,314 - CCNA_00403 0.60 -0.9
420,314 - CCNA_00403 0.60 +0.3
420,314 - CCNA_00403 0.60 -0.1
420,317 + CCNA_00403 0.61 -1.5
420,346 - CCNA_00403 0.64 -0.1
420,358 - CCNA_00403 0.65 +2.1
420,365 - CCNA_00403 0.66 -1.2
420,380 + CCNA_00403 0.67 -0.6
420,400 - CCNA_00403 0.69 -2.3
420,405 - CCNA_00403 0.70 -1.2
420,428 + CCNA_00403 0.72 -1.9
420,442 + CCNA_00403 0.73 -0.1
420,442 + CCNA_00403 0.73 -0.4
420,450 - CCNA_00403 0.74 -0.8
420,481 + CCNA_00403 0.77 +0.9
420,481 + CCNA_00403 0.77 -0.6
420,483 + CCNA_00403 0.78 -1.2
420,504 - CCNA_00403 0.80 -2.4
420,515 + CCNA_00403 0.81 +1.1
420,516 + CCNA_00403 0.81 +0.1
420,524 - CCNA_00403 0.82 -1.3
420,558 + CCNA_00403 0.85 +0.2
420,563 + CCNA_00403 0.86 +1.8
420,563 + CCNA_00403 0.86 -0.5
420,563 + CCNA_00403 0.86 -1.3
420,563 + CCNA_00403 0.86 -1.2
420,563 + CCNA_00403 0.86 -1.5
420,571 - CCNA_00403 0.87 +0.2
420,571 - CCNA_00403 0.87 +1.1
420,571 - CCNA_00403 0.87 -0.4
420,571 - CCNA_00403 0.87 -0.2
420,571 - CCNA_00403 0.87 -1.0
420,583 + CCNA_00403 0.88 +0.4
420,588 + CCNA_00403 0.88 +2.1
420,588 + CCNA_00403 0.88 -1.3
420,591 - CCNA_00403 0.89 +0.3
420,596 - CCNA_00403 0.89 -0.5
420,596 - CCNA_00403 0.89 -0.7
420,596 - CCNA_00403 0.89 -0.1
420,596 - CCNA_00403 0.89 -0.0
420,596 - CCNA_00403 0.89 -0.2
420,611 + +0.1
420,614 - -1.3
420,639 - -1.0
420,640 - +0.9
420,665 - -1.0
420,702 - +1.5
420,707 + +0.4
420,738 + -1.6
420,743 + -0.0
420,751 - CCNA_00404 0.10 +0.1
420,754 - CCNA_00404 0.11 -0.8
420,810 + CCNA_00404 0.22 +0.7
420,827 + CCNA_00404 0.25 -0.4
420,861 - CCNA_00404 0.31 -1.4
420,874 - CCNA_00404 0.34 -0.5
420,874 - CCNA_00404 0.34 -1.4
420,898 + CCNA_00404 0.39 -1.4
420,975 + CCNA_00404 0.53 -0.9
421,016 + CCNA_00404 0.61 +0.1
421,024 - CCNA_00404 0.63 -1.3
421,024 - CCNA_00404 0.63 -0.7
421,039 - CCNA_00404 0.66 -0.5
421,073 - CCNA_00404 0.72 -1.5
421,114 - CCNA_00404 0.80 -0.4
421,124 - CCNA_00404 0.82 -2.5
421,142 + CCNA_00404 0.86 -0.1
421,162 + CCNA_00404 0.90 -1.4
421,177 + -0.7
421,177 + +0.6
421,185 - -2.0
421,187 + -3.0
421,195 + +0.0
421,205 + -0.7
421,214 + +1.1
421,230 - -0.3
421,257 + +1.2
421,262 + -0.7
421,265 - -0.2
421,265 - -2.6
421,267 + -0.5
421,270 - -1.7
421,286 + -2.5
421,309 + CCNA_00405 0.11 +0.4
421,320 + CCNA_00405 0.13 +0.5
421,333 - CCNA_00405 0.14 -1.5
421,333 - CCNA_00405 0.14 -0.2
421,353 - CCNA_00405 0.17 -1.9
421,353 - CCNA_00405 0.17 -0.0
421,354 + CCNA_00405 0.17 -1.0
421,354 + CCNA_00405 0.17 +0.5
421,354 + CCNA_00405 0.17 -1.1
421,354 + CCNA_00405 0.17 -1.7
421,362 - CCNA_00405 0.18 +0.3
421,392 + CCNA_00405 0.21 +0.2
421,424 + CCNA_00405 0.25 +0.1
421,429 + CCNA_00405 0.25 -0.1
421,437 - CCNA_00405 0.26 -0.1
421,458 - CCNA_00405 0.29 -0.2
421,471 - CCNA_00405 0.30 -1.1
421,516 + CCNA_00405 0.36 -1.9
421,518 + CCNA_00405 0.36 -0.5
421,523 + CCNA_00405 0.36 +1.8
421,523 + CCNA_00405 0.36 -0.1
421,545 + CCNA_00405 0.39 +2.5
421,567 - CCNA_00405 0.41 -1.5
421,597 + CCNA_00405 0.45 -2.1
421,598 - CCNA_00405 0.45 -0.8
421,610 + CCNA_00405 0.47 +1.0
421,627 + CCNA_00405 0.48 +0.3
421,646 - CCNA_00405 0.51 -1.2
421,646 - CCNA_00405 0.51 -0.2
421,660 + CCNA_00405 0.52 -0.2
421,694 + CCNA_00405 0.56 -0.8
421,694 + CCNA_00405 0.56 -1.2
421,702 - CCNA_00405 0.57 -0.4
421,702 - CCNA_00405 0.57 -0.7
421,702 - CCNA_00405 0.57 -1.2
421,702 - CCNA_00405 0.57 -0.9
421,735 + CCNA_00405 0.61 +0.1
421,742 + CCNA_00405 0.62 -0.2
421,742 + CCNA_00405 0.62 -0.4
421,743 - CCNA_00405 0.62 -0.2
421,743 - CCNA_00405 0.62 -1.5
421,743 - CCNA_00405 0.62 +0.9
421,743 - CCNA_00405 0.62 -3.1
421,750 + CCNA_00405 0.63 -1.6
421,758 - CCNA_00405 0.64 -2.5
421,758 - CCNA_00405 0.64 +0.6
421,826 - CCNA_00405 0.72 -0.6
421,831 - CCNA_00405 0.72 -1.2
421,831 - CCNA_00405 0.72 -1.4
421,862 + CCNA_00405 0.76 +0.8
421,862 + CCNA_00405 0.76 +0.1
421,862 + CCNA_00405 0.76 -2.2
421,867 + CCNA_00405 0.76 -2.6
421,870 - CCNA_00405 0.77 -0.0
421,883 + CCNA_00405 0.78 -0.7
421,912 + CCNA_00405 0.82 -0.1
421,971 + CCNA_00405 0.89 -0.6
421,981 + CCNA_00405 0.90 -0.6
421,981 + CCNA_00405 0.90 +0.2
421,981 + CCNA_00405 0.90 -0.8
421,981 + CCNA_00405 0.90 -0.2
421,981 + CCNA_00405 0.90 +0.4
421,981 + CCNA_00405 0.90 +0.2
421,981 + CCNA_00405 0.90 -1.2
421,981 + CCNA_00405 0.90 +1.3
421,981 + CCNA_00405 0.90 -0.4
421,989 - +0.6
422,035 - +0.7
422,068 + -0.8
422,085 - -0.6
422,092 + +0.6
422,100 - -1.9
422,101 - -2.6
422,101 - -0.6
422,113 + -0.6
422,113 + +0.5
422,113 + +0.0
422,186 - -0.5
422,191 + -0.1

Or see this region's nucleotide sequence