Experiment: R2A with Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20810 and CA265_RS20815 are separated by 463 nucleotides CA265_RS20815 and CA265_RS20820 are separated by 200 nucleotides CA265_RS20820 and CA265_RS20825 are separated by 44 nucleotides CA265_RS20825 and CA265_RS20830 are separated by 78 nucleotides
CA265_RS20810: CA265_RS20810 - hypothetical protein, at 5,136,158 to 5,136,586
_RS20810
CA265_RS20815: CA265_RS20815 - hypothetical protein, at 5,137,050 to 5,137,247
_RS20815
CA265_RS20820: CA265_RS20820 - transcriptional regulator, at 5,137,448 to 5,137,849
_RS20820
CA265_RS20825: CA265_RS20825 - magnesium chelatase, at 5,137,894 to 5,138,382
_RS20825
CA265_RS20830: CA265_RS20830 - hypothetical protein, at 5,138,461 to 5,139,483
_RS20830
Position (kb) 5137
5138 Strain fitness (log2 ratio) -1
0
1
2
3 at 5136.466 kb on + strand, within CA265_RS20810 at 5136.467 kb on - strand, within CA265_RS20810 at 5136.554 kb on - strand at 5136.642 kb on - strand at 5136.642 kb on - strand at 5136.657 kb on - strand at 5136.760 kb on - strand at 5136.883 kb on + strand at 5136.883 kb on + strand at 5136.910 kb on - strand at 5136.994 kb on - strand at 5136.994 kb on - strand at 5137.023 kb on + strand at 5137.024 kb on - strand at 5137.028 kb on - strand at 5137.104 kb on - strand, within CA265_RS20815 at 5137.104 kb on - strand, within CA265_RS20815 at 5137.151 kb on + strand, within CA265_RS20815 at 5137.156 kb on + strand at 5137.156 kb on + strand, within CA265_RS20815 at 5137.157 kb on - strand, within CA265_RS20815 at 5137.157 kb on - strand, within CA265_RS20815 at 5137.167 kb on + strand at 5137.198 kb on + strand, within CA265_RS20815 at 5137.221 kb on - strand, within CA265_RS20815 at 5137.246 kb on - strand at 5137.246 kb on - strand at 5137.277 kb on + strand at 5137.341 kb on - strand at 5137.357 kb on + strand at 5137.358 kb on - strand at 5137.450 kb on - strand at 5137.450 kb on - strand at 5137.450 kb on - strand at 5137.550 kb on - strand, within CA265_RS20820 at 5137.586 kb on + strand, within CA265_RS20820 at 5137.673 kb on + strand, within CA265_RS20820 at 5137.673 kb on + strand, within CA265_RS20820 at 5137.674 kb on - strand, within CA265_RS20820 at 5137.687 kb on - strand, within CA265_RS20820 at 5137.687 kb on - strand, within CA265_RS20820 at 5137.708 kb on + strand, within CA265_RS20820 at 5137.754 kb on - strand, within CA265_RS20820 at 5137.761 kb on - strand, within CA265_RS20820 at 5137.972 kb on - strand, within CA265_RS20825 at 5137.991 kb on + strand, within CA265_RS20825 at 5138.013 kb on - strand, within CA265_RS20825 at 5138.043 kb on - strand, within CA265_RS20825 at 5138.095 kb on - strand, within CA265_RS20825 at 5138.141 kb on + strand, within CA265_RS20825 at 5138.141 kb on + strand, within CA265_RS20825 at 5138.166 kb on + strand, within CA265_RS20825 at 5138.216 kb on + strand, within CA265_RS20825 at 5138.238 kb on - strand, within CA265_RS20825 at 5138.243 kb on + strand, within CA265_RS20825 at 5138.244 kb on - strand, within CA265_RS20825 at 5138.313 kb on + strand, within CA265_RS20825 at 5138.316 kb on - strand, within CA265_RS20825 at 5138.348 kb on - strand at 5138.348 kb on - strand at 5138.417 kb on + strand at 5138.525 kb on + strand at 5138.565 kb on - strand, within CA265_RS20830 at 5138.595 kb on + strand at 5138.623 kb on + strand, within CA265_RS20830 at 5138.627 kb on + strand, within CA265_RS20830 at 5138.628 kb on - strand, within CA265_RS20830 at 5138.716 kb on + strand, within CA265_RS20830 at 5138.716 kb on + strand, within CA265_RS20830 at 5138.767 kb on - strand, within CA265_RS20830
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 0.08 mM remove 5,136,466 + CA265_RS20810 0.72 -0.3 5,136,467 - CA265_RS20810 0.72 -0.6 5,136,554 - -0.4 5,136,642 - +0.6 5,136,642 - +0.3 5,136,657 - +0.7 5,136,760 - -0.0 5,136,883 + -1.2 5,136,883 + +1.0 5,136,910 - +0.3 5,136,994 - +1.2 5,136,994 - +0.5 5,137,023 + -0.2 5,137,024 - +0.4 5,137,028 - -0.5 5,137,104 - CA265_RS20815 0.27 -0.7 5,137,104 - CA265_RS20815 0.27 -0.4 5,137,151 + CA265_RS20815 0.51 -0.3 5,137,156 + -0.2 5,137,156 + CA265_RS20815 0.54 +0.2 5,137,157 - CA265_RS20815 0.54 -0.2 5,137,157 - CA265_RS20815 0.54 -0.5 5,137,167 + +2.8 5,137,198 + CA265_RS20815 0.75 +1.8 5,137,221 - CA265_RS20815 0.86 -0.2 5,137,246 - +1.1 5,137,246 - +0.3 5,137,277 + -1.6 5,137,341 - -0.4 5,137,357 + +0.3 5,137,358 - +0.3 5,137,450 - -0.8 5,137,450 - +0.6 5,137,450 - -0.5 5,137,550 - CA265_RS20820 0.25 -1.1 5,137,586 + CA265_RS20820 0.34 -0.5 5,137,673 + CA265_RS20820 0.56 -0.3 5,137,673 + CA265_RS20820 0.56 -1.2 5,137,674 - CA265_RS20820 0.56 -1.5 5,137,687 - CA265_RS20820 0.59 -0.2 5,137,687 - CA265_RS20820 0.59 +0.8 5,137,708 + CA265_RS20820 0.65 -0.4 5,137,754 - CA265_RS20820 0.76 +0.1 5,137,761 - CA265_RS20820 0.78 -0.6 5,137,972 - CA265_RS20825 0.16 -1.6 5,137,991 + CA265_RS20825 0.20 +0.1 5,138,013 - CA265_RS20825 0.24 -0.3 5,138,043 - CA265_RS20825 0.30 +0.2 5,138,095 - CA265_RS20825 0.41 -0.5 5,138,141 + CA265_RS20825 0.51 -1.0 5,138,141 + CA265_RS20825 0.51 -0.6 5,138,166 + CA265_RS20825 0.56 +0.8 5,138,216 + CA265_RS20825 0.66 +0.7 5,138,238 - CA265_RS20825 0.70 -0.6 5,138,243 + CA265_RS20825 0.71 +1.8 5,138,244 - CA265_RS20825 0.72 -0.6 5,138,313 + CA265_RS20825 0.86 +0.7 5,138,316 - CA265_RS20825 0.86 -0.9 5,138,348 - -0.3 5,138,348 - -1.6 5,138,417 + +2.2 5,138,525 + -0.2 5,138,565 - CA265_RS20830 0.10 -0.7 5,138,595 + +1.3 5,138,623 + CA265_RS20830 0.16 +0.3 5,138,627 + CA265_RS20830 0.16 -1.1 5,138,628 - CA265_RS20830 0.16 +0.2 5,138,716 + CA265_RS20830 0.25 +1.1 5,138,716 + CA265_RS20830 0.25 +0.4 5,138,767 - CA265_RS20830 0.30 +0.7
Or see this region's nucleotide sequence