Experiment: R2A with Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17900 and CA265_RS17905 are separated by 44 nucleotides CA265_RS17905 and CA265_RS17910 are separated by 59 nucleotides CA265_RS17910 and CA265_RS17915 overlap by 6 nucleotides CA265_RS17915 and CA265_RS17920 are separated by 69 nucleotides
CA265_RS17900: CA265_RS17900 - SAM-dependent methyltransferase, at 4,477,137 to 4,477,919
_RS17900
CA265_RS17905: CA265_RS17905 - hypothetical protein, at 4,477,964 to 4,478,827
_RS17905
CA265_RS17910: CA265_RS17910 - glycoside hydrolase, at 4,478,887 to 4,479,969
_RS17910
CA265_RS17915: CA265_RS17915 - hypothetical protein, at 4,479,964 to 4,480,446
_RS17915
CA265_RS17920: CA265_RS17920 - glycoside hydrolase, at 4,480,516 to 4,481,343
_RS17920
Position (kb) 4478
4479
4480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4477.919 kb on + strand at 4477.920 kb on - strand at 4477.923 kb on - strand at 4477.952 kb on + strand at 4477.953 kb on - strand at 4477.953 kb on - strand at 4477.984 kb on - strand at 4478.037 kb on + strand at 4478.038 kb on - strand at 4478.058 kb on - strand, within CA265_RS17905 at 4478.071 kb on - strand, within CA265_RS17905 at 4478.137 kb on + strand, within CA265_RS17905 at 4478.138 kb on - strand, within CA265_RS17905 at 4478.179 kb on - strand, within CA265_RS17905 at 4478.190 kb on - strand, within CA265_RS17905 at 4478.190 kb on - strand, within CA265_RS17905 at 4478.193 kb on + strand, within CA265_RS17905 at 4478.194 kb on - strand, within CA265_RS17905 at 4478.194 kb on - strand, within CA265_RS17905 at 4478.226 kb on + strand, within CA265_RS17905 at 4478.226 kb on + strand, within CA265_RS17905 at 4478.257 kb on - strand, within CA265_RS17905 at 4478.378 kb on + strand, within CA265_RS17905 at 4478.431 kb on - strand, within CA265_RS17905 at 4478.484 kb on - strand, within CA265_RS17905 at 4478.489 kb on - strand, within CA265_RS17905 at 4478.556 kb on - strand, within CA265_RS17905 at 4478.557 kb on + strand, within CA265_RS17905 at 4478.558 kb on - strand, within CA265_RS17905 at 4478.558 kb on - strand, within CA265_RS17905 at 4478.558 kb on - strand, within CA265_RS17905 at 4478.588 kb on + strand, within CA265_RS17905 at 4478.677 kb on - strand, within CA265_RS17905 at 4478.697 kb on - strand, within CA265_RS17905 at 4478.707 kb on + strand, within CA265_RS17905 at 4478.707 kb on + strand, within CA265_RS17905 at 4478.708 kb on - strand, within CA265_RS17905 at 4478.708 kb on - strand, within CA265_RS17905 at 4478.720 kb on - strand, within CA265_RS17905 at 4478.756 kb on + strand at 4478.803 kb on - strand at 4478.809 kb on + strand at 4478.810 kb on - strand at 4478.812 kb on + strand at 4478.919 kb on + strand at 4478.931 kb on - strand at 4478.931 kb on - strand at 4478.961 kb on - strand at 4478.971 kb on + strand at 4478.971 kb on + strand at 4478.972 kb on - strand at 4478.972 kb on - strand at 4478.993 kb on + strand at 4478.994 kb on - strand at 4478.994 kb on - strand at 4478.994 kb on - strand at 4478.997 kb on + strand, within CA265_RS17910 at 4479.047 kb on + strand, within CA265_RS17910 at 4479.114 kb on - strand, within CA265_RS17910 at 4479.124 kb on - strand, within CA265_RS17910 at 4479.124 kb on - strand, within CA265_RS17910 at 4479.193 kb on - strand, within CA265_RS17910 at 4479.330 kb on + strand, within CA265_RS17910 at 4479.337 kb on - strand, within CA265_RS17910 at 4479.337 kb on - strand, within CA265_RS17910 at 4479.337 kb on - strand, within CA265_RS17910 at 4479.348 kb on - strand, within CA265_RS17910 at 4479.447 kb on + strand, within CA265_RS17910 at 4479.479 kb on + strand, within CA265_RS17910 at 4479.480 kb on - strand, within CA265_RS17910 at 4479.538 kb on + strand, within CA265_RS17910 at 4479.538 kb on + strand, within CA265_RS17910 at 4479.539 kb on - strand, within CA265_RS17910 at 4479.560 kb on + strand, within CA265_RS17910 at 4479.596 kb on + strand, within CA265_RS17910 at 4479.602 kb on + strand, within CA265_RS17910 at 4479.637 kb on + strand, within CA265_RS17910 at 4479.637 kb on + strand, within CA265_RS17910 at 4479.638 kb on - strand, within CA265_RS17910 at 4479.658 kb on - strand, within CA265_RS17910 at 4479.756 kb on + strand, within CA265_RS17910 at 4479.756 kb on + strand, within CA265_RS17910 at 4479.757 kb on - strand, within CA265_RS17910 at 4479.790 kb on + strand, within CA265_RS17910 at 4479.790 kb on + strand at 4479.790 kb on + strand, within CA265_RS17910 at 4479.814 kb on + strand, within CA265_RS17910 at 4479.815 kb on - strand, within CA265_RS17910 at 4479.815 kb on - strand, within CA265_RS17910 at 4479.837 kb on + strand, within CA265_RS17910 at 4479.852 kb on - strand, within CA265_RS17910 at 4479.862 kb on + strand at 4479.919 kb on + strand at 4479.957 kb on - strand at 4479.966 kb on - strand at 4479.968 kb on - strand at 4480.008 kb on + strand at 4480.008 kb on + strand at 4480.061 kb on - strand, within CA265_RS17915 at 4480.104 kb on - strand, within CA265_RS17915 at 4480.140 kb on + strand, within CA265_RS17915 at 4480.141 kb on - strand, within CA265_RS17915 at 4480.143 kb on - strand, within CA265_RS17915 at 4480.276 kb on + strand, within CA265_RS17915 at 4480.451 kb on + strand at 4480.452 kb on - strand at 4480.456 kb on + strand at 4480.485 kb on + strand at 4480.551 kb on + strand at 4480.559 kb on + strand at 4480.593 kb on + strand at 4480.615 kb on - strand, within CA265_RS17920 at 4480.662 kb on + strand, within CA265_RS17920 at 4480.662 kb on + strand, within CA265_RS17920 at 4480.663 kb on - strand, within CA265_RS17920 at 4480.683 kb on + strand, within CA265_RS17920 at 4480.685 kb on + strand at 4480.686 kb on - strand, within CA265_RS17920 at 4480.686 kb on - strand, within CA265_RS17920 at 4480.686 kb on - strand, within CA265_RS17920 at 4480.725 kb on - strand, within CA265_RS17920 at 4480.796 kb on + strand, within CA265_RS17920 at 4480.797 kb on - strand, within CA265_RS17920 at 4480.801 kb on - strand, within CA265_RS17920 at 4480.818 kb on + strand, within CA265_RS17920 at 4480.827 kb on + strand, within CA265_RS17920 at 4480.837 kb on - strand, within CA265_RS17920 at 4480.931 kb on + strand, within CA265_RS17920 at 4480.932 kb on + strand, within CA265_RS17920 at 4480.934 kb on + strand, within CA265_RS17920 at 4480.958 kb on - strand, within CA265_RS17920
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 0.08 mM remove 4,477,919 + +0.1 4,477,920 - +0.0 4,477,923 - +0.2 4,477,952 + -3.1 4,477,953 - -0.4 4,477,953 - -0.1 4,477,984 - +0.8 4,478,037 + +0.3 4,478,038 - +0.8 4,478,058 - CA265_RS17905 0.11 -0.3 4,478,071 - CA265_RS17905 0.12 -0.5 4,478,137 + CA265_RS17905 0.20 -0.5 4,478,138 - CA265_RS17905 0.20 -0.7 4,478,179 - CA265_RS17905 0.25 +0.2 4,478,190 - CA265_RS17905 0.26 +0.3 4,478,190 - CA265_RS17905 0.26 +0.7 4,478,193 + CA265_RS17905 0.27 -0.8 4,478,194 - CA265_RS17905 0.27 +2.4 4,478,194 - CA265_RS17905 0.27 +0.1 4,478,226 + CA265_RS17905 0.30 -0.9 4,478,226 + CA265_RS17905 0.30 -0.1 4,478,257 - CA265_RS17905 0.34 +0.5 4,478,378 + CA265_RS17905 0.48 -0.2 4,478,431 - CA265_RS17905 0.54 +0.0 4,478,484 - CA265_RS17905 0.60 -0.1 4,478,489 - CA265_RS17905 0.61 +0.2 4,478,556 - CA265_RS17905 0.69 +0.4 4,478,557 + CA265_RS17905 0.69 +0.4 4,478,558 - CA265_RS17905 0.69 +0.7 4,478,558 - CA265_RS17905 0.69 +0.1 4,478,558 - CA265_RS17905 0.69 -0.6 4,478,588 + CA265_RS17905 0.72 +0.4 4,478,677 - CA265_RS17905 0.83 +0.6 4,478,697 - CA265_RS17905 0.85 +0.1 4,478,707 + CA265_RS17905 0.86 +0.6 4,478,707 + CA265_RS17905 0.86 -0.1 4,478,708 - CA265_RS17905 0.86 +0.1 4,478,708 - CA265_RS17905 0.86 -1.6 4,478,720 - CA265_RS17905 0.88 +0.9 4,478,756 + +0.1 4,478,803 - -1.4 4,478,809 + -0.4 4,478,810 - +0.1 4,478,812 + -0.5 4,478,919 + -0.3 4,478,931 - -0.0 4,478,931 - +0.4 4,478,961 - +0.2 4,478,971 + -1.2 4,478,971 + -0.2 4,478,972 - -0.6 4,478,972 - +0.1 4,478,993 + -0.8 4,478,994 - -0.4 4,478,994 - -0.7 4,478,994 - -0.3 4,478,997 + CA265_RS17910 0.10 -0.3 4,479,047 + CA265_RS17910 0.15 +0.8 4,479,114 - CA265_RS17910 0.21 -0.1 4,479,124 - CA265_RS17910 0.22 +0.1 4,479,124 - CA265_RS17910 0.22 +0.8 4,479,193 - CA265_RS17910 0.28 +0.2 4,479,330 + CA265_RS17910 0.41 +0.1 4,479,337 - CA265_RS17910 0.42 +0.5 4,479,337 - CA265_RS17910 0.42 +0.6 4,479,337 - CA265_RS17910 0.42 +0.1 4,479,348 - CA265_RS17910 0.43 +0.6 4,479,447 + CA265_RS17910 0.52 -2.0 4,479,479 + CA265_RS17910 0.55 +1.3 4,479,480 - CA265_RS17910 0.55 -0.1 4,479,538 + CA265_RS17910 0.60 +0.5 4,479,538 + CA265_RS17910 0.60 +1.3 4,479,539 - CA265_RS17910 0.60 +0.2 4,479,560 + CA265_RS17910 0.62 +0.3 4,479,596 + CA265_RS17910 0.65 -0.4 4,479,602 + CA265_RS17910 0.66 +1.0 4,479,637 + CA265_RS17910 0.69 +0.8 4,479,637 + CA265_RS17910 0.69 +0.3 4,479,638 - CA265_RS17910 0.69 -1.1 4,479,658 - CA265_RS17910 0.71 -0.1 4,479,756 + CA265_RS17910 0.80 -1.0 4,479,756 + CA265_RS17910 0.80 +1.6 4,479,757 - CA265_RS17910 0.80 +0.9 4,479,790 + CA265_RS17910 0.83 -0.1 4,479,790 + -0.9 4,479,790 + CA265_RS17910 0.83 +0.0 4,479,814 + CA265_RS17910 0.86 +0.3 4,479,815 - CA265_RS17910 0.86 -0.6 4,479,815 - CA265_RS17910 0.86 -0.3 4,479,837 + CA265_RS17910 0.88 -0.1 4,479,852 - CA265_RS17910 0.89 -0.6 4,479,862 + +0.8 4,479,919 + -0.7 4,479,957 - -0.7 4,479,966 - +0.5 4,479,968 - -0.2 4,480,008 + +0.1 4,480,008 + -0.6 4,480,061 - CA265_RS17915 0.20 -0.4 4,480,104 - CA265_RS17915 0.29 -1.3 4,480,140 + CA265_RS17915 0.36 -1.4 4,480,141 - CA265_RS17915 0.37 -0.5 4,480,143 - CA265_RS17915 0.37 +0.5 4,480,276 + CA265_RS17915 0.65 -1.0 4,480,451 + +0.7 4,480,452 - +0.5 4,480,456 + +0.6 4,480,485 + +0.6 4,480,551 + +0.6 4,480,559 + +0.6 4,480,593 + -0.8 4,480,615 - CA265_RS17920 0.12 -0.9 4,480,662 + CA265_RS17920 0.18 +0.0 4,480,662 + CA265_RS17920 0.18 -0.2 4,480,663 - CA265_RS17920 0.18 -0.4 4,480,683 + CA265_RS17920 0.20 +0.6 4,480,685 + +0.7 4,480,686 - CA265_RS17920 0.21 +1.7 4,480,686 - CA265_RS17920 0.21 +1.0 4,480,686 - CA265_RS17920 0.21 -1.4 4,480,725 - CA265_RS17920 0.25 -0.3 4,480,796 + CA265_RS17920 0.34 -0.1 4,480,797 - CA265_RS17920 0.34 -1.6 4,480,801 - CA265_RS17920 0.34 -1.5 4,480,818 + CA265_RS17920 0.36 +1.0 4,480,827 + CA265_RS17920 0.38 +0.5 4,480,837 - CA265_RS17920 0.39 -0.7 4,480,931 + CA265_RS17920 0.50 -0.4 4,480,932 + CA265_RS17920 0.50 -0.5 4,480,934 + CA265_RS17920 0.50 -0.5 4,480,958 - CA265_RS17920 0.53 -1.2
Or see this region's nucleotide sequence