Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11545

Experiment: R2A with Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS11545 and CA265_RS11550 are separated by 0 nucleotides CA265_RS11545: CA265_RS11545 - hypothetical protein, at 2,864,390 to 2,864,593 _RS11545 CA265_RS11550: CA265_RS11550 - sulfatase, at 2,864,594 to 2,866,012 _RS11550 Position (kb) 2864 2865Strain fitness (log2 ratio) -3 -2 -1 0 1at 2863.457 kb on - strandat 2863.497 kb on + strandat 2863.500 kb on + strandat 2863.517 kb on + strandat 2863.669 kb on + strandat 2863.715 kb on + strandat 2863.768 kb on - strandat 2863.794 kb on + strandat 2863.827 kb on + strandat 2863.827 kb on + strandat 2863.844 kb on + strandat 2864.055 kb on - strandat 2864.108 kb on - strandat 2864.117 kb on - strandat 2864.117 kb on - strandat 2864.135 kb on - strandat 2864.151 kb on + strandat 2864.291 kb on - strandat 2864.321 kb on + strandat 2864.321 kb on + strandat 2864.435 kb on - strand, within CA265_RS11545at 2864.447 kb on + strand, within CA265_RS11545at 2864.576 kb on + strandat 2864.595 kb on + strandat 2864.596 kb on - strandat 2864.596 kb on - strandat 2864.738 kb on + strand, within CA265_RS11550at 2864.738 kb on + strand, within CA265_RS11550at 2864.738 kb on + strand, within CA265_RS11550at 2864.744 kb on + strand, within CA265_RS11550at 2864.845 kb on - strand, within CA265_RS11550at 2864.876 kb on + strand, within CA265_RS11550at 2864.952 kb on - strand, within CA265_RS11550at 2864.952 kb on - strand, within CA265_RS11550at 2865.014 kb on + strand, within CA265_RS11550at 2865.020 kb on + strand, within CA265_RS11550at 2865.151 kb on + strand, within CA265_RS11550at 2865.153 kb on - strand, within CA265_RS11550at 2865.236 kb on - strand, within CA265_RS11550at 2865.384 kb on + strand, within CA265_RS11550at 2865.406 kb on + strand, within CA265_RS11550at 2865.456 kb on + strand, within CA265_RS11550at 2865.476 kb on + strand, within CA265_RS11550at 2865.490 kb on + strand, within CA265_RS11550at 2865.491 kb on - strand, within CA265_RS11550at 2865.578 kb on + strand, within CA265_RS11550

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 0.08 mM
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2,863,457 - -0.7
2,863,497 + -0.4
2,863,500 + -1.0
2,863,517 + -0.0
2,863,669 + +1.3
2,863,715 + -1.1
2,863,768 - -0.5
2,863,794 + -0.1
2,863,827 + -0.5
2,863,827 + -0.3
2,863,844 + -0.2
2,864,055 - -0.5
2,864,108 - +0.4
2,864,117 - -0.7
2,864,117 - -0.6
2,864,135 - +0.9
2,864,151 + -2.9
2,864,291 - +0.1
2,864,321 + +0.1
2,864,321 + -0.1
2,864,435 - CA265_RS11545 0.22 -0.6
2,864,447 + CA265_RS11545 0.28 -0.4
2,864,576 + -0.2
2,864,595 + +0.7
2,864,596 - +0.8
2,864,596 - +0.1
2,864,738 + CA265_RS11550 0.10 +0.5
2,864,738 + CA265_RS11550 0.10 +0.3
2,864,738 + CA265_RS11550 0.10 -0.3
2,864,744 + CA265_RS11550 0.11 -0.5
2,864,845 - CA265_RS11550 0.18 -0.5
2,864,876 + CA265_RS11550 0.20 +0.2
2,864,952 - CA265_RS11550 0.25 -0.6
2,864,952 - CA265_RS11550 0.25 +1.0
2,865,014 + CA265_RS11550 0.30 +0.1
2,865,020 + CA265_RS11550 0.30 -0.4
2,865,151 + CA265_RS11550 0.39 -0.9
2,865,153 - CA265_RS11550 0.39 -1.6
2,865,236 - CA265_RS11550 0.45 +0.3
2,865,384 + CA265_RS11550 0.56 +0.5
2,865,406 + CA265_RS11550 0.57 -0.6
2,865,456 + CA265_RS11550 0.61 -0.1
2,865,476 + CA265_RS11550 0.62 -0.3
2,865,490 + CA265_RS11550 0.63 +0.4
2,865,491 - CA265_RS11550 0.63 -1.0
2,865,578 + CA265_RS11550 0.69 +0.2

Or see this region's nucleotide sequence