Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01875

Experiment: R2A with Chlorite 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS01875 and CA265_RS01880 are separated by 5 nucleotides CA265_RS01875: CA265_RS01875 - hypothetical protein, at 468,592 to 469,029 _RS01875 CA265_RS01880: CA265_RS01880 - phosphoglycerate kinase, at 469,035 to 470,228 _RS01880 Position (kb) 468 469 470Strain fitness (log2 ratio) -2 -1 0 1at 467.605 kb on - strandat 467.605 kb on - strandat 467.608 kb on - strandat 467.614 kb on - strandat 467.615 kb on + strandat 467.615 kb on + strandat 467.615 kb on + strandat 467.616 kb on - strandat 467.656 kb on + strandat 467.656 kb on + strandat 467.663 kb on - strandat 467.786 kb on + strandat 467.787 kb on - strandat 467.792 kb on - strandat 467.876 kb on + strandat 467.928 kb on + strandat 467.948 kb on + strandat 467.954 kb on + strandat 467.956 kb on + strandat 467.956 kb on + strandat 467.957 kb on - strandat 468.030 kb on - strandat 468.117 kb on + strandat 468.194 kb on + strandat 468.286 kb on + strandat 468.286 kb on + strandat 468.287 kb on - strandat 468.288 kb on + strandat 468.288 kb on + strandat 468.289 kb on - strandat 468.289 kb on - strandat 468.289 kb on - strandat 468.362 kb on + strandat 468.534 kb on - strandat 468.537 kb on - strandat 468.578 kb on - strandat 468.578 kb on - strandat 468.620 kb on + strandat 468.620 kb on + strandat 468.719 kb on + strand, within CA265_RS01875at 468.810 kb on + strand, within CA265_RS01875at 468.810 kb on + strand, within CA265_RS01875at 468.885 kb on + strand, within CA265_RS01875at 468.906 kb on + strand, within CA265_RS01875at 468.975 kb on + strand, within CA265_RS01875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 0.08 mM
remove
467,605 - -0.2
467,605 - +0.6
467,608 - -0.3
467,614 - -0.2
467,615 + -0.2
467,615 + +0.3
467,615 + +0.4
467,616 - -0.0
467,656 + -0.2
467,656 + +0.8
467,663 - +0.1
467,786 + -0.5
467,787 - -0.4
467,792 - -0.4
467,876 + +1.2
467,928 + +0.2
467,948 + +0.3
467,954 + +0.8
467,956 + +0.5
467,956 + +0.1
467,957 - -0.7
468,030 - +0.4
468,117 + +0.6
468,194 + -0.0
468,286 + -0.3
468,286 + -0.9
468,287 - +1.2
468,288 + -0.5
468,288 + +0.1
468,289 - -2.2
468,289 - -0.5
468,289 - -1.4
468,362 + +0.4
468,534 - -0.7
468,537 - -0.6
468,578 - +0.1
468,578 - -0.0
468,620 + -0.3
468,620 + -0.5
468,719 + CA265_RS01875 0.29 -0.9
468,810 + CA265_RS01875 0.50 -0.6
468,810 + CA265_RS01875 0.50 -0.7
468,885 + CA265_RS01875 0.67 -0.6
468,906 + CA265_RS01875 0.72 -0.0
468,975 + CA265_RS01875 0.87 -1.1

Or see this region's nucleotide sequence