Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22435 and BPHYT_RS22440 are separated by 123 nucleotides BPHYT_RS22440 and BPHYT_RS22445 are separated by 10 nucleotides
BPHYT_RS22435: BPHYT_RS22435 - 4-aminobutyrate aminotransferase, at 588,358 to 589,641
_RS22435
BPHYT_RS22440: BPHYT_RS22440 - DNA-binding protein, at 589,765 to 591,270
_RS22440
BPHYT_RS22445: BPHYT_RS22445 - multidrug DMT transporter permease, at 591,281 to 592,117
_RS22445
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 589.111 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.389 kb on - strand, within BPHYT_RS22435 at 589.412 kb on + strand, within BPHYT_RS22435 at 589.646 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.706 kb on + strand at 589.706 kb on + strand at 589.707 kb on - strand at 589.707 kb on - strand at 589.708 kb on + strand at 589.832 kb on - strand at 589.960 kb on + strand, within BPHYT_RS22440 at 589.961 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 590.238 kb on + strand, within BPHYT_RS22440 at 590.239 kb on - strand, within BPHYT_RS22440 at 590.275 kb on + strand, within BPHYT_RS22440 at 590.418 kb on - strand, within BPHYT_RS22440 at 590.938 kb on - strand, within BPHYT_RS22440 at 591.050 kb on + strand, within BPHYT_RS22440 at 591.050 kb on + strand, within BPHYT_RS22440 at 591.050 kb on + strand, within BPHYT_RS22440 at 591.051 kb on - strand, within BPHYT_RS22440 at 591.053 kb on + strand, within BPHYT_RS22440 at 591.139 kb on + strand at 591.139 kb on + strand at 591.139 kb on + strand at 591.142 kb on + strand at 591.572 kb on - strand, within BPHYT_RS22445 at 591.652 kb on - strand, within BPHYT_RS22445 at 591.652 kb on - strand, within BPHYT_RS22445 at 591.934 kb on + strand, within BPHYT_RS22445 at 591.935 kb on - strand, within BPHYT_RS22445 at 591.937 kb on - strand, within BPHYT_RS22445 at 591.997 kb on + strand, within BPHYT_RS22445 at 592.000 kb on - strand, within BPHYT_RS22445 at 592.000 kb on - strand, within BPHYT_RS22445 at 592.173 kb on - strand at 592.173 kb on - strand at 592.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 589,111 + BPHYT_RS22435 0.59 -1.6 589,388 + BPHYT_RS22435 0.80 -2.5 589,388 + BPHYT_RS22435 0.80 -2.1 589,389 - BPHYT_RS22435 0.80 -2.0 589,412 + BPHYT_RS22435 0.82 -0.9 589,646 - -1.2 589,696 - -0.6 589,696 - -1.5 589,696 - -1.3 589,706 + -2.1 589,706 + -1.5 589,707 - -0.8 589,707 - -1.2 589,708 + -1.2 589,832 - -0.4 589,960 + BPHYT_RS22440 0.13 -0.2 589,961 - BPHYT_RS22440 0.13 -0.7 589,985 - BPHYT_RS22440 0.15 -0.1 589,985 - BPHYT_RS22440 0.15 -0.4 589,985 - BPHYT_RS22440 0.15 -0.1 590,238 + BPHYT_RS22440 0.31 -0.5 590,239 - BPHYT_RS22440 0.31 -0.1 590,275 + BPHYT_RS22440 0.34 +0.5 590,418 - BPHYT_RS22440 0.43 -0.4 590,938 - BPHYT_RS22440 0.78 -0.5 591,050 + BPHYT_RS22440 0.85 -0.2 591,050 + BPHYT_RS22440 0.85 -0.0 591,050 + BPHYT_RS22440 0.85 -0.9 591,051 - BPHYT_RS22440 0.85 -1.5 591,053 + BPHYT_RS22440 0.86 +0.0 591,139 + -0.1 591,139 + +0.0 591,139 + +0.1 591,142 + -0.7 591,572 - BPHYT_RS22445 0.35 +0.6 591,652 - BPHYT_RS22445 0.44 +0.3 591,652 - BPHYT_RS22445 0.44 +0.1 591,934 + BPHYT_RS22445 0.78 +0.0 591,935 - BPHYT_RS22445 0.78 +0.3 591,937 - BPHYT_RS22445 0.78 +0.2 591,997 + BPHYT_RS22445 0.86 +0.4 592,000 - BPHYT_RS22445 0.86 +0.5 592,000 - BPHYT_RS22445 0.86 -0.0 592,173 - -0.1 592,173 - -0.3 592,193 + +0.4
Or see this region's nucleotide sequence