Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03590

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03585 and BPHYT_RS03590 are separated by 483 nucleotidesBPHYT_RS03590 and BPHYT_RS03595 are separated by 279 nucleotides BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356 _RS03585 BPHYT_RS03590: BPHYT_RS03590 - chaperone protein DnaK, at 814,840 to 816,792 _RS03590 BPHYT_RS03595: BPHYT_RS03595 - chaperone protein DnaJ, at 817,072 to 818,211 _RS03595 Position (kb) 814 815 816 817Strain fitness (log2 ratio) -2 -1 0 1at 814.354 kb on + strandat 814.355 kb on - strandat 814.493 kb on - strandat 814.505 kb on - strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.509 kb on - strandat 814.510 kb on + strandat 814.511 kb on - strandat 814.617 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 816.928 kb on + strandat 816.928 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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814,354 + -1.8
814,355 - -0.8
814,493 - +0.6
814,505 - +0.1
814,508 + -0.5
814,508 + +0.6
814,508 + -1.4
814,508 + -0.5
814,509 - -0.3
814,510 + -0.2
814,511 - -1.6
814,617 + +0.2
814,741 + +0.1
814,741 + +0.0
814,741 + +0.8
814,741 + +0.2
814,741 + -0.5
816,928 + -0.7
816,928 + -0.3

Or see this region's nucleotide sequence