Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01230 and AO356_01235 are separated by 336 nucleotides AO356_01235 and AO356_01240 are separated by 27 nucleotides
AO356_01230: AO356_01230 - GntR family transcriptional regulator, at 281,894 to 282,607
_01230
AO356_01235: AO356_01235 - MFS transporter, at 282,944 to 284,293
_01235
AO356_01240: AO356_01240 - glucarate dehydratase, at 284,321 to 285,664
_01240
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.032 kb on + strand, within AO356_01230 at 282.205 kb on - strand, within AO356_01230 at 282.571 kb on + strand at 282.572 kb on - strand at 283.058 kb on + strand at 283.058 kb on + strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.059 kb on - strand at 283.131 kb on - strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.295 kb on + strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.296 kb on - strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.352 kb on + strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.353 kb on - strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.355 kb on + strand, within AO356_01235 at 283.505 kb on + strand, within AO356_01235 at 283.506 kb on - strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.724 kb on + strand, within AO356_01235 at 283.725 kb on - strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.748 kb on + strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.749 kb on - strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.859 kb on + strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 283.860 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.049 kb on - strand, within AO356_01235 at 284.316 kb on + strand at 284.316 kb on + strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.317 kb on - strand at 284.694 kb on + strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.716 kb on - strand, within AO356_01240 at 284.784 kb on - strand, within AO356_01240 at 284.816 kb on + strand, within AO356_01240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 282,032 + AO356_01230 0.19 +0.6 282,032 + AO356_01230 0.19 +0.3 282,032 + AO356_01230 0.19 +0.4 282,205 - AO356_01230 0.44 +1.2 282,571 + +0.2 282,572 - +0.4 283,058 + -1.4 283,058 + -0.7 283,059 - -0.3 283,059 - +0.4 283,059 - -0.1 283,059 - -0.3 283,131 - AO356_01235 0.14 -0.7 283,295 + AO356_01235 0.26 +0.3 283,295 + AO356_01235 0.26 +0.1 283,295 + AO356_01235 0.26 +0.0 283,296 - AO356_01235 0.26 +0.7 283,296 - AO356_01235 0.26 -0.9 283,352 + AO356_01235 0.30 +0.4 283,352 + AO356_01235 0.30 +1.6 283,353 - AO356_01235 0.30 -0.9 283,353 - AO356_01235 0.30 +0.8 283,355 + AO356_01235 0.30 -1.0 283,355 + AO356_01235 0.30 +0.1 283,505 + AO356_01235 0.42 +0.0 283,506 - AO356_01235 0.42 +0.2 283,724 + AO356_01235 0.58 +0.7 283,724 + AO356_01235 0.58 +1.0 283,725 - AO356_01235 0.58 +0.0 283,748 + AO356_01235 0.60 +1.0 283,748 + AO356_01235 0.60 +1.0 283,748 + AO356_01235 0.60 -0.0 283,749 - AO356_01235 0.60 +1.0 283,749 - AO356_01235 0.60 +0.8 283,749 - AO356_01235 0.60 -0.6 283,859 + AO356_01235 0.68 +1.0 283,859 + AO356_01235 0.68 +0.6 283,860 - AO356_01235 0.68 -0.5 283,860 - AO356_01235 0.68 +0.6 284,049 - AO356_01235 0.82 -0.9 284,049 - AO356_01235 0.82 -2.1 284,316 + -0.5 284,316 + +0.3 284,317 - +0.3 284,317 - -0.4 284,317 - +0.2 284,317 - -0.0 284,317 - +0.7 284,317 - +0.2 284,694 + AO356_01240 0.28 +0.3 284,716 - AO356_01240 0.29 +1.6 284,716 - AO356_01240 0.29 -0.6 284,784 - AO356_01240 0.34 -1.4 284,816 + AO356_01240 0.37 -0.2
Or see this region's nucleotide sequence