Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004336

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004335 and ABIE53_004336 are separated by 71 nucleotidesABIE53_004336 and ABIE53_004337 are separated by 53 nucleotides ABIE53_004335: ABIE53_004335 - DNA-binding transcriptional LysR family regulator, at 511,711 to 512,634 _004335 ABIE53_004336: ABIE53_004336 - hypothetical protein, at 512,706 to 513,008 _004336 ABIE53_004337: ABIE53_004337 - DNA-binding transcriptional LysR family regulator, at 513,062 to 513,985 _004337 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 512.026 kb on + strand, within ABIE53_004335at 512.026 kb on + strand, within ABIE53_004335at 512.026 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.221 kb on + strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.222 kb on - strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.223 kb on + strand, within ABIE53_004335at 512.224 kb on - strand, within ABIE53_004335at 512.224 kb on - strand, within ABIE53_004335at 512.224 kb on - strand, within ABIE53_004335at 512.224 kb on - strand, within ABIE53_004335at 512.224 kb on - strand, within ABIE53_004335at 512.347 kb on + strand, within ABIE53_004335at 512.347 kb on + strand, within ABIE53_004335at 512.348 kb on - strand, within ABIE53_004335at 512.500 kb on + strand, within ABIE53_004335at 512.522 kb on - strand, within ABIE53_004335at 512.527 kb on + strand, within ABIE53_004335at 512.527 kb on + strand, within ABIE53_004335at 512.528 kb on - strand, within ABIE53_004335at 512.528 kb on - strand, within ABIE53_004335at 512.528 kb on - strand, within ABIE53_004335at 512.531 kb on - strand, within ABIE53_004335at 512.531 kb on - strand, within ABIE53_004335at 512.531 kb on - strand, within ABIE53_004335at 512.571 kb on + strandat 512.652 kb on + strandat 512.652 kb on + strandat 512.652 kb on + strandat 512.652 kb on + strandat 512.652 kb on + strandat 512.652 kb on + strandat 512.653 kb on - strandat 512.653 kb on - strandat 512.653 kb on - strandat 512.655 kb on - strandat 512.666 kb on + strandat 512.666 kb on + strandat 512.666 kb on + strandat 512.666 kb on + strandat 512.666 kb on + strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.667 kb on - strandat 512.672 kb on + strandat 512.790 kb on + strand, within ABIE53_004336at 512.835 kb on + strand, within ABIE53_004336at 512.836 kb on - strand, within ABIE53_004336at 512.836 kb on - strand, within ABIE53_004336at 512.836 kb on - strand, within ABIE53_004336at 512.836 kb on - strand, within ABIE53_004336at 512.853 kb on - strand, within ABIE53_004336at 512.875 kb on - strand, within ABIE53_004336at 512.913 kb on + strand, within ABIE53_004336at 512.913 kb on + strand, within ABIE53_004336at 512.914 kb on - strand, within ABIE53_004336at 512.975 kb on - strand, within ABIE53_004336at 513.046 kb on + strandat 513.046 kb on + strandat 513.046 kb on + strandat 513.046 kb on + strandat 513.047 kb on - strandat 513.047 kb on - strandat 513.047 kb on - strandat 513.136 kb on + strandat 513.136 kb on + strandat 513.136 kb on + strandat 513.137 kb on - strandat 513.140 kb on + strandat 513.140 kb on + strandat 513.140 kb on + strandat 513.140 kb on + strandat 513.141 kb on - strandat 513.178 kb on - strand, within ABIE53_004337at 513.178 kb on - strand, within ABIE53_004337at 513.234 kb on + strand, within ABIE53_004337at 513.235 kb on - strand, within ABIE53_004337at 513.447 kb on + strand, within ABIE53_004337at 513.568 kb on - strand, within ABIE53_004337at 513.640 kb on + strand, within ABIE53_004337at 513.641 kb on - strand, within ABIE53_004337at 513.643 kb on - strand, within ABIE53_004337at 513.643 kb on - strand, within ABIE53_004337at 513.643 kb on - strand, within ABIE53_004337at 513.673 kb on + strand, within ABIE53_004337at 513.762 kb on + strand, within ABIE53_004337at 513.762 kb on + strand, within ABIE53_004337at 513.763 kb on - strand, within ABIE53_004337at 513.763 kb on - strand, within ABIE53_004337at 513.999 kb on + strandat 514.000 kb on - strandat 514.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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512,026 + ABIE53_004335 0.34 -1.2
512,026 + ABIE53_004335 0.34 -0.0
512,026 + ABIE53_004335 0.34 -0.1
512,221 + ABIE53_004335 0.55 +1.2
512,221 + ABIE53_004335 0.55 +0.9
512,221 + ABIE53_004335 0.55 +0.7
512,221 + ABIE53_004335 0.55 +0.4
512,221 + ABIE53_004335 0.55 +0.3
512,221 + ABIE53_004335 0.55 +0.6
512,221 + ABIE53_004335 0.55 -0.1
512,221 + ABIE53_004335 0.55 -1.2
512,222 - ABIE53_004335 0.55 +0.8
512,222 - ABIE53_004335 0.55 +0.3
512,222 - ABIE53_004335 0.55 -0.2
512,222 - ABIE53_004335 0.55 -1.2
512,222 - ABIE53_004335 0.55 +1.4
512,222 - ABIE53_004335 0.55 -1.9
512,222 - ABIE53_004335 0.55 -0.2
512,222 - ABIE53_004335 0.55 -0.9
512,222 - ABIE53_004335 0.55 +1.4
512,222 - ABIE53_004335 0.55 -0.6
512,222 - ABIE53_004335 0.55 +0.4
512,223 + ABIE53_004335 0.55 -3.0
512,223 + ABIE53_004335 0.55 +0.2
512,223 + ABIE53_004335 0.55 +0.6
512,223 + ABIE53_004335 0.55 -0.9
512,223 + ABIE53_004335 0.55 -0.6
512,223 + ABIE53_004335 0.55 +0.6
512,223 + ABIE53_004335 0.55 +1.4
512,224 - ABIE53_004335 0.56 -0.2
512,224 - ABIE53_004335 0.56 -0.4
512,224 - ABIE53_004335 0.56 +0.4
512,224 - ABIE53_004335 0.56 -2.1
512,224 - ABIE53_004335 0.56 -0.6
512,347 + ABIE53_004335 0.69 +0.5
512,347 + ABIE53_004335 0.69 -2.9
512,348 - ABIE53_004335 0.69 +0.4
512,500 + ABIE53_004335 0.85 +0.8
512,522 - ABIE53_004335 0.88 +1.1
512,527 + ABIE53_004335 0.88 +0.9
512,527 + ABIE53_004335 0.88 +0.4
512,528 - ABIE53_004335 0.88 -1.2
512,528 - ABIE53_004335 0.88 -0.7
512,528 - ABIE53_004335 0.88 -1.1
512,531 - ABIE53_004335 0.89 +0.6
512,531 - ABIE53_004335 0.89 +0.7
512,531 - ABIE53_004335 0.89 -0.2
512,571 + +0.2
512,652 + -0.3
512,652 + -0.5
512,652 + -0.2
512,652 + -0.9
512,652 + +0.2
512,652 + -0.6
512,653 - +0.4
512,653 - -1.2
512,653 - -1.2
512,655 - -0.3
512,666 + +1.7
512,666 + +0.3
512,666 + -1.9
512,666 + -0.2
512,666 + -1.3
512,667 - +0.9
512,667 - +0.1
512,667 - -1.2
512,667 - +0.7
512,667 - -1.2
512,667 - +0.4
512,667 - -0.3
512,667 - +0.4
512,672 + -0.0
512,790 + ABIE53_004336 0.28 -0.3
512,835 + ABIE53_004336 0.43 -1.0
512,836 - ABIE53_004336 0.43 -1.5
512,836 - ABIE53_004336 0.43 -1.0
512,836 - ABIE53_004336 0.43 -0.3
512,836 - ABIE53_004336 0.43 +0.4
512,853 - ABIE53_004336 0.49 +0.4
512,875 - ABIE53_004336 0.56 -1.8
512,913 + ABIE53_004336 0.68 +0.2
512,913 + ABIE53_004336 0.68 -1.5
512,914 - ABIE53_004336 0.69 -0.1
512,975 - ABIE53_004336 0.89 -2.6
513,046 + +2.6
513,046 + -0.2
513,046 + +1.4
513,046 + -1.0
513,047 - -0.0
513,047 - -0.9
513,047 - +0.4
513,136 + +0.2
513,136 + -0.3
513,136 + -1.1
513,137 - -1.3
513,140 + -0.2
513,140 + -0.6
513,140 + -0.9
513,140 + -0.2
513,141 - +0.6
513,178 - ABIE53_004337 0.13 -0.3
513,178 - ABIE53_004337 0.13 +0.7
513,234 + ABIE53_004337 0.19 -1.0
513,235 - ABIE53_004337 0.19 -1.5
513,447 + ABIE53_004337 0.42 -0.4
513,568 - ABIE53_004337 0.55 -0.7
513,640 + ABIE53_004337 0.63 -0.6
513,641 - ABIE53_004337 0.63 -0.2
513,643 - ABIE53_004337 0.63 -0.2
513,643 - ABIE53_004337 0.63 -0.3
513,643 - ABIE53_004337 0.63 -1.8
513,673 + ABIE53_004337 0.66 -2.6
513,762 + ABIE53_004337 0.76 -1.9
513,762 + ABIE53_004337 0.76 +0.1
513,763 - ABIE53_004337 0.76 -1.9
513,763 - ABIE53_004337 0.76 -0.6
513,999 + -0.7
514,000 - +0.2
514,000 - -2.2

Or see this region's nucleotide sequence