Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000909

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000908 and ABIE53_000909 are separated by 532 nucleotidesABIE53_000909 and ABIE53_000910 are separated by 85 nucleotides ABIE53_000908: ABIE53_000908 - D-lactate dehydrogenase, at 983,119 to 984,141 _000908 ABIE53_000909: ABIE53_000909 - putative transport protein, at 984,674 to 986,356 _000909 ABIE53_000910: ABIE53_000910 - putative transport protein, at 986,442 to 988,124 _000910 Position (kb) 984 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 983.731 kb on + strand, within ABIE53_000908at 983.732 kb on - strand, within ABIE53_000908at 983.732 kb on - strand, within ABIE53_000908at 983.732 kb on - strand, within ABIE53_000908at 983.905 kb on - strand, within ABIE53_000908at 983.905 kb on - strand, within ABIE53_000908at 983.905 kb on - strand, within ABIE53_000908at 983.905 kb on - strand, within ABIE53_000908at 983.905 kb on - strand, within ABIE53_000908at 984.008 kb on + strand, within ABIE53_000908at 984.008 kb on + strand, within ABIE53_000908at 984.008 kb on + strand, within ABIE53_000908at 984.009 kb on - strand, within ABIE53_000908at 984.009 kb on - strand, within ABIE53_000908at 984.009 kb on - strand, within ABIE53_000908at 984.009 kb on - strand, within ABIE53_000908at 984.068 kb on + strandat 984.068 kb on + strandat 984.069 kb on - strandat 984.069 kb on - strandat 984.110 kb on + strandat 984.110 kb on + strandat 984.111 kb on - strandat 984.111 kb on - strandat 984.111 kb on - strandat 984.256 kb on + strandat 984.257 kb on - strandat 984.282 kb on + strandat 984.292 kb on - strandat 984.325 kb on - strandat 984.348 kb on + strandat 984.348 kb on + strandat 984.349 kb on - strandat 984.349 kb on - strandat 984.352 kb on + strandat 984.352 kb on + strandat 984.353 kb on - strandat 984.353 kb on - strandat 984.353 kb on - strandat 984.402 kb on - strandat 984.402 kb on - strandat 984.422 kb on + strandat 984.422 kb on + strandat 984.423 kb on - strandat 984.423 kb on - strandat 984.423 kb on - strandat 984.423 kb on - strandat 984.496 kb on + strandat 984.515 kb on + strandat 984.516 kb on - strandat 984.541 kb on + strandat 984.550 kb on + strandat 984.631 kb on - strandat 984.656 kb on - strandat 984.658 kb on - strandat 984.811 kb on - strandat 984.811 kb on - strandat 984.811 kb on - strandat 985.148 kb on + strand, within ABIE53_000909at 985.148 kb on + strand, within ABIE53_000909at 985.148 kb on + strand, within ABIE53_000909at 985.148 kb on + strand, within ABIE53_000909at 985.148 kb on + strand, within ABIE53_000909at 985.148 kb on + strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.149 kb on - strand, within ABIE53_000909at 985.160 kb on + strand, within ABIE53_000909at 985.160 kb on + strand, within ABIE53_000909at 985.160 kb on + strand, within ABIE53_000909at 985.160 kb on + strand, within ABIE53_000909at 985.161 kb on - strand, within ABIE53_000909at 985.161 kb on - strand, within ABIE53_000909at 985.161 kb on - strand, within ABIE53_000909at 985.161 kb on - strand, within ABIE53_000909at 985.174 kb on + strand, within ABIE53_000909at 985.175 kb on - strand, within ABIE53_000909at 985.175 kb on - strand, within ABIE53_000909at 985.193 kb on - strand, within ABIE53_000909at 985.193 kb on - strand, within ABIE53_000909at 985.281 kb on + strand, within ABIE53_000909at 985.281 kb on + strand, within ABIE53_000909at 985.281 kb on + strand, within ABIE53_000909at 985.282 kb on - strand, within ABIE53_000909at 985.282 kb on - strand, within ABIE53_000909at 985.282 kb on - strand, within ABIE53_000909at 985.477 kb on - strand, within ABIE53_000909at 985.658 kb on + strand, within ABIE53_000909at 985.658 kb on + strand, within ABIE53_000909at 985.658 kb on + strand, within ABIE53_000909at 985.658 kb on + strand, within ABIE53_000909at 985.659 kb on - strand, within ABIE53_000909at 985.659 kb on - strand, within ABIE53_000909at 985.787 kb on + strand, within ABIE53_000909at 985.788 kb on - strand, within ABIE53_000909at 985.788 kb on - strand, within ABIE53_000909at 985.788 kb on - strand, within ABIE53_000909at 985.788 kb on - strand, within ABIE53_000909at 985.788 kb on - strand, within ABIE53_000909at 985.823 kb on + strand, within ABIE53_000909at 985.935 kb on + strand, within ABIE53_000909at 985.936 kb on - strand, within ABIE53_000909at 985.936 kb on - strand, within ABIE53_000909at 985.936 kb on - strand, within ABIE53_000909at 985.936 kb on - strand, within ABIE53_000909at 985.936 kb on - strand, within ABIE53_000909at 986.027 kb on - strand, within ABIE53_000909at 986.081 kb on + strand, within ABIE53_000909at 986.082 kb on - strand, within ABIE53_000909at 986.143 kb on - strand, within ABIE53_000909at 986.285 kb on + strandat 986.285 kb on + strandat 986.285 kb on + strandat 986.285 kb on + strandat 986.285 kb on + strandat 986.285 kb on + strandat 986.286 kb on - strandat 986.286 kb on - strandat 986.354 kb on + strandat 986.413 kb on - strandat 986.413 kb on - strandat 986.413 kb on - strandat 986.425 kb on + strandat 986.453 kb on - strandat 986.483 kb on - strandat 986.511 kb on + strandat 986.511 kb on + strandat 986.645 kb on + strand, within ABIE53_000910at 986.645 kb on + strand, within ABIE53_000910at 986.650 kb on - strand, within ABIE53_000910at 986.926 kb on - strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.937 kb on + strand, within ABIE53_000910at 986.938 kb on - strand, within ABIE53_000910at 986.938 kb on - strand, within ABIE53_000910at 986.938 kb on - strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.203 kb on + strand, within ABIE53_000910at 987.204 kb on - strand, within ABIE53_000910at 987.204 kb on - strand, within ABIE53_000910

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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983,731 + ABIE53_000908 0.60 +0.9
983,732 - ABIE53_000908 0.60 -1.2
983,732 - ABIE53_000908 0.60 +0.3
983,732 - ABIE53_000908 0.60 -0.6
983,905 - ABIE53_000908 0.77 +0.4
983,905 - ABIE53_000908 0.77 +0.2
983,905 - ABIE53_000908 0.77 +1.4
983,905 - ABIE53_000908 0.77 -0.4
983,905 - ABIE53_000908 0.77 -0.1
984,008 + ABIE53_000908 0.87 +0.2
984,008 + ABIE53_000908 0.87 -0.5
984,008 + ABIE53_000908 0.87 +0.2
984,009 - ABIE53_000908 0.87 -1.6
984,009 - ABIE53_000908 0.87 +0.2
984,009 - ABIE53_000908 0.87 +0.6
984,009 - ABIE53_000908 0.87 -0.2
984,068 + +2.4
984,068 + -1.4
984,069 - +0.4
984,069 - -0.4
984,110 + +0.4
984,110 + +0.5
984,111 - +1.2
984,111 - -0.1
984,111 - +1.3
984,256 + -0.4
984,257 - +0.4
984,282 + -0.9
984,292 - +2.7
984,325 - +2.6
984,348 + -1.6
984,348 + -0.6
984,349 - +2.9
984,349 - +0.5
984,352 + +1.7
984,352 + -0.2
984,353 - +0.8
984,353 - -0.6
984,353 - +0.4
984,402 - -0.1
984,402 - -0.6
984,422 + -0.9
984,422 + +0.9
984,423 - +0.0
984,423 - -0.5
984,423 - +0.4
984,423 - +1.9
984,496 + -0.2
984,515 + +0.4
984,516 - -1.5
984,541 + +0.4
984,550 + +2.5
984,631 - -0.1
984,656 - -2.4
984,658 - -0.2
984,811 - -0.4
984,811 - +1.4
984,811 - +1.4
985,148 + ABIE53_000909 0.28 -2.0
985,148 + ABIE53_000909 0.28 +0.4
985,148 + ABIE53_000909 0.28 +0.6
985,148 + ABIE53_000909 0.28 -1.2
985,148 + ABIE53_000909 0.28 -0.5
985,148 + ABIE53_000909 0.28 +0.2
985,149 - ABIE53_000909 0.28 +2.2
985,149 - ABIE53_000909 0.28 +1.9
985,149 - ABIE53_000909 0.28 -1.1
985,149 - ABIE53_000909 0.28 -1.5
985,149 - ABIE53_000909 0.28 +0.6
985,149 - ABIE53_000909 0.28 -0.9
985,160 + ABIE53_000909 0.29 +0.3
985,160 + ABIE53_000909 0.29 -1.0
985,160 + ABIE53_000909 0.29 -0.2
985,160 + ABIE53_000909 0.29 +0.6
985,161 - ABIE53_000909 0.29 +0.2
985,161 - ABIE53_000909 0.29 -2.0
985,161 - ABIE53_000909 0.29 -1.6
985,161 - ABIE53_000909 0.29 -1.1
985,174 + ABIE53_000909 0.30 -0.6
985,175 - ABIE53_000909 0.30 -1.2
985,175 - ABIE53_000909 0.30 -1.2
985,193 - ABIE53_000909 0.31 -0.6
985,193 - ABIE53_000909 0.31 -0.9
985,281 + ABIE53_000909 0.36 +1.4
985,281 + ABIE53_000909 0.36 -3.1
985,281 + ABIE53_000909 0.36 +0.9
985,282 - ABIE53_000909 0.36 +3.5
985,282 - ABIE53_000909 0.36 +0.4
985,282 - ABIE53_000909 0.36 +0.9
985,477 - ABIE53_000909 0.48 +1.5
985,658 + ABIE53_000909 0.58 -0.0
985,658 + ABIE53_000909 0.58 +0.9
985,658 + ABIE53_000909 0.58 +1.7
985,658 + ABIE53_000909 0.58 +0.4
985,659 - ABIE53_000909 0.59 +0.1
985,659 - ABIE53_000909 0.59 -0.1
985,787 + ABIE53_000909 0.66 -1.1
985,788 - ABIE53_000909 0.66 +0.9
985,788 - ABIE53_000909 0.66 +0.3
985,788 - ABIE53_000909 0.66 +0.9
985,788 - ABIE53_000909 0.66 -2.1
985,788 - ABIE53_000909 0.66 -1.1
985,823 + ABIE53_000909 0.68 +0.4
985,935 + ABIE53_000909 0.75 +1.1
985,936 - ABIE53_000909 0.75 -0.9
985,936 - ABIE53_000909 0.75 -2.1
985,936 - ABIE53_000909 0.75 -1.2
985,936 - ABIE53_000909 0.75 +0.0
985,936 - ABIE53_000909 0.75 +0.5
986,027 - ABIE53_000909 0.80 -0.5
986,081 + ABIE53_000909 0.84 +1.9
986,082 - ABIE53_000909 0.84 +1.9
986,143 - ABIE53_000909 0.87 +0.5
986,285 + +0.4
986,285 + -0.4
986,285 + +0.9
986,285 + +0.5
986,285 + +0.6
986,285 + +0.5
986,286 - +0.9
986,286 - +1.4
986,354 + -0.9
986,413 - +4.3
986,413 - -0.8
986,413 - +0.6
986,425 + +0.1
986,453 - -0.4
986,483 - -0.1
986,511 + +0.1
986,511 + -1.5
986,645 + ABIE53_000910 0.12 -0.5
986,645 + ABIE53_000910 0.12 -1.6
986,650 - ABIE53_000910 0.12 +0.2
986,926 - ABIE53_000910 0.29 +0.6
986,937 + ABIE53_000910 0.29 +0.3
986,937 + ABIE53_000910 0.29 +0.7
986,937 + ABIE53_000910 0.29 -0.2
986,937 + ABIE53_000910 0.29 +0.8
986,937 + ABIE53_000910 0.29 -0.5
986,937 + ABIE53_000910 0.29 +0.7
986,937 + ABIE53_000910 0.29 -0.6
986,938 - ABIE53_000910 0.29 +0.1
986,938 - ABIE53_000910 0.29 -3.0
986,938 - ABIE53_000910 0.29 +0.4
987,203 + ABIE53_000910 0.45 +1.5
987,203 + ABIE53_000910 0.45 -0.3
987,203 + ABIE53_000910 0.45 +1.1
987,203 + ABIE53_000910 0.45 +0.4
987,203 + ABIE53_000910 0.45 +0.6
987,203 + ABIE53_000910 0.45 +1.7
987,203 + ABIE53_000910 0.45 +2.4
987,204 - ABIE53_000910 0.45 -2.2
987,204 - ABIE53_000910 0.45 -0.8

Or see this region's nucleotide sequence