Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04407 and SMc04881 are separated by 518 nucleotides SMc04881 and SMc04408 overlap by 4 nucleotides SMc04408 and SMc04409 are separated by 128 nucleotides SMc04409 and SMc04410 are separated by 113 nucleotides
SMc04407: SMc04407 - transport transmembrane protein, at 3,613,831 to 3,615,720
SMc04407
SMc04881: SMc04881 - virulence associated protein, at 3,616,239 to 3,616,643
SMc04881
SMc04408: SMc04408 - virulence-associated protein, at 3,616,640 to 3,616,900
SMc04408
SMc04409: SMc04409 - hypothetical protein, at 3,617,029 to 3,617,199
SMc04409
SMc04410: SMc04410 - aspartate-semialdehyde dehydrogenase, at 3,617,313 to 3,618,347
SMc04410
Position (kb)
3616
3617 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3615.750 kb on + strand at 3615.879 kb on + strand at 3615.892 kb on + strand at 3615.970 kb on + strand at 3615.971 kb on - strand at 3615.971 kb on - strand at 3615.971 kb on - strand at 3615.971 kb on - strand at 3615.979 kb on + strand at 3615.988 kb on - strand at 3616.199 kb on + strand at 3616.217 kb on + strand at 3616.217 kb on + strand at 3616.223 kb on + strand at 3616.223 kb on + strand at 3616.223 kb on + strand at 3616.223 kb on + strand at 3616.240 kb on + strand at 3616.241 kb on - strand at 3616.277 kb on + strand at 3616.277 kb on + strand at 3616.352 kb on - strand, within SMc04881 at 3616.352 kb on - strand, within SMc04881 at 3616.519 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.566 kb on + strand, within SMc04881 at 3616.567 kb on - strand, within SMc04881 at 3616.631 kb on + strand at 3616.923 kb on - strand at 3617.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,615,750 + +0.6 3,615,879 + -1.0 3,615,892 + -0.3 3,615,970 + -0.2 3,615,971 - -0.1 3,615,971 - +0.1 3,615,971 - -0.8 3,615,971 - +0.7 3,615,979 + +0.0 3,615,988 - +0.1 3,616,199 + -0.2 3,616,217 + -0.1 3,616,217 + -0.1 3,616,223 + -0.7 3,616,223 + +0.2 3,616,223 + +0.4 3,616,223 + -0.4 3,616,240 + -0.4 3,616,241 - -0.1 3,616,277 + +0.8 3,616,277 + +0.5 3,616,352 - SMc04881 0.28 -0.2 3,616,352 - SMc04881 0.28 +0.3 3,616,519 + SMc04881 0.69 -0.5 3,616,566 + SMc04881 0.81 +0.9 3,616,566 + SMc04881 0.81 -0.3 3,616,566 + SMc04881 0.81 -0.3 3,616,567 - SMc04881 0.81 +0.3 3,616,631 + +0.1 3,616,923 - -0.4 3,617,307 + -5.4
Or see this region's nucleotide sequence