Strain Fitness in Sinorhizobium meliloti 1021 around SMc04045

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04044 and SMc04060 are separated by 284 nucleotidesSMc04060 and SMc04045 are separated by 432 nucleotidesSMc04045 and SMc04046 are separated by 172 nucleotides SMc04044: SMc04044 - 2-component receiver domain-containing protein, at 3,047,905 to 3,048,267 SMc04044 SMc04060: SMc04060 - tRNA-Val, at 3,048,552 to 3,048,626 SMc04060 SMc04045: SMc04045 - dihydroxy-acid dehydratase, at 3,049,059 to 3,050,897 SMc04045 SMc04046: SMc04046 - hypothetical protein, at 3,051,070 to 3,051,474 SMc04046 Position (kb) 3049 3050 3051Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.278 kb on + strandat 3048.279 kb on - strandat 3048.279 kb on - strandat 3048.279 kb on - strandat 3048.279 kb on - strandat 3048.279 kb on - strandat 3048.389 kb on - strandat 3048.446 kb on - strandat 3048.646 kb on + strandat 3048.646 kb on + strandat 3048.647 kb on - strandat 3048.824 kb on - strandat 3048.824 kb on - strandat 3048.948 kb on - strandat 3049.038 kb on - strandat 3049.069 kb on - strandat 3049.163 kb on + strandat 3049.164 kb on - strandat 3049.374 kb on + strand, within SMc04045at 3049.375 kb on - strand, within SMc04045at 3049.375 kb on - strand, within SMc04045at 3049.375 kb on - strand, within SMc04045at 3049.375 kb on - strand, within SMc04045at 3049.376 kb on + strand, within SMc04045at 3049.376 kb on + strand, within SMc04045at 3049.377 kb on - strand, within SMc04045at 3049.377 kb on - strand, within SMc04045at 3049.795 kb on - strand, within SMc04045at 3049.898 kb on + strand, within SMc04045at 3049.899 kb on - strand, within SMc04045at 3049.926 kb on + strand, within SMc04045at 3049.939 kb on + strand, within SMc04045at 3050.036 kb on - strand, within SMc04045at 3050.550 kb on + strand, within SMc04045at 3050.838 kb on + strandat 3050.838 kb on + strandat 3050.839 kb on - strandat 3051.126 kb on + strand, within SMc04046at 3051.126 kb on + strand, within SMc04046at 3051.126 kb on + strand, within SMc04046at 3051.126 kb on + strand, within SMc04046at 3051.127 kb on - strand, within SMc04046at 3051.128 kb on + strand, within SMc04046at 3051.128 kb on + strand, within SMc04046at 3051.128 kb on + strand, within SMc04046at 3051.129 kb on - strand, within SMc04046at 3051.129 kb on - strand, within SMc04046at 3051.129 kb on - strand, within SMc04046at 3051.221 kb on + strand, within SMc04046at 3051.234 kb on - strand, within SMc04046at 3051.360 kb on - strand, within SMc04046at 3051.453 kb on + strandat 3051.453 kb on + strandat 3051.453 kb on + strandat 3051.454 kb on - strandat 3051.454 kb on - strandat 3051.460 kb on - strandat 3051.460 kb on - strandat 3051.460 kb on - strandat 3051.498 kb on + strandat 3051.531 kb on + strandat 3051.531 kb on + strandat 3051.531 kb on + strandat 3051.531 kb on + strandat 3051.545 kb on + strandat 3051.546 kb on - strandat 3051.546 kb on - strandat 3051.568 kb on + strandat 3051.572 kb on - strandat 3051.575 kb on + strandat 3051.576 kb on - strandat 3051.576 kb on - strandat 3051.576 kb on - strandat 3051.576 kb on - strandat 3051.576 kb on - strandat 3051.695 kb on + strandat 3051.695 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.821 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,048,278 + -0.2
3,048,278 + -0.7
3,048,278 + -0.4
3,048,278 + -0.2
3,048,278 + -0.8
3,048,278 + +0.1
3,048,278 + -0.0
3,048,279 - +0.1
3,048,279 - -1.1
3,048,279 - -0.3
3,048,279 - -0.7
3,048,279 - -0.3
3,048,389 - -0.6
3,048,446 - -0.0
3,048,646 + +0.5
3,048,646 + -0.1
3,048,647 - +0.1
3,048,824 - +0.1
3,048,824 - +0.2
3,048,948 - -4.7
3,049,038 - -3.4
3,049,069 - -3.2
3,049,163 + -5.3
3,049,164 - -3.5
3,049,374 + SMc04045 0.17 -4.8
3,049,375 - SMc04045 0.17 -4.2
3,049,375 - SMc04045 0.17 -6.5
3,049,375 - SMc04045 0.17 -3.6
3,049,375 - SMc04045 0.17 -4.1
3,049,376 + SMc04045 0.17 -1.6
3,049,376 + SMc04045 0.17 -6.0
3,049,377 - SMc04045 0.17 -4.9
3,049,377 - SMc04045 0.17 -3.6
3,049,795 - SMc04045 0.40 -4.0
3,049,898 + SMc04045 0.46 -2.2
3,049,899 - SMc04045 0.46 -3.8
3,049,926 + SMc04045 0.47 -1.0
3,049,939 + SMc04045 0.48 -1.2
3,050,036 - SMc04045 0.53 -5.6
3,050,550 + SMc04045 0.81 -5.1
3,050,838 + -7.1
3,050,838 + -5.6
3,050,839 - -4.8
3,051,126 + SMc04046 0.14 -3.3
3,051,126 + SMc04046 0.14 +0.7
3,051,126 + SMc04046 0.14 -0.3
3,051,126 + SMc04046 0.14 -0.9
3,051,127 - SMc04046 0.14 -0.2
3,051,128 + SMc04046 0.14 -0.1
3,051,128 + SMc04046 0.14 -0.5
3,051,128 + SMc04046 0.14 -0.0
3,051,129 - SMc04046 0.15 -0.2
3,051,129 - SMc04046 0.15 -0.2
3,051,129 - SMc04046 0.15 +0.7
3,051,221 + SMc04046 0.37 +1.0
3,051,234 - SMc04046 0.40 +0.1
3,051,360 - SMc04046 0.72 -2.3
3,051,453 + +0.6
3,051,453 + +0.5
3,051,453 + -0.1
3,051,454 - +0.1
3,051,454 - -0.0
3,051,460 - +0.4
3,051,460 - -0.4
3,051,460 - +0.3
3,051,498 + +0.1
3,051,531 + -0.2
3,051,531 + -0.9
3,051,531 + +0.8
3,051,531 + -0.1
3,051,545 + -0.1
3,051,546 - -0.3
3,051,546 - +2.1
3,051,568 + -0.4
3,051,572 - -0.7
3,051,575 + -1.6
3,051,576 - -0.8
3,051,576 - -0.8
3,051,576 - -0.3
3,051,576 - +0.0
3,051,576 - +0.8
3,051,695 + +1.5
3,051,695 + +0.1
3,051,704 + -0.6
3,051,704 + +0.4
3,051,704 + +0.3
3,051,704 + +0.4
3,051,821 - -0.2
3,051,823 - +0.0
3,051,823 - +0.3
3,051,823 - +0.1
3,051,823 - +0.2
3,051,823 - +0.5
3,051,823 - -1.0
3,051,823 - -0.1
3,051,823 - -1.6
3,051,823 - -0.1
3,051,823 - -0.1

Or see this region's nucleotide sequence