Strain Fitness in Sinorhizobium meliloti 1021 around SMc04026

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04025 and SMc04026 are separated by 330 nucleotidesSMc04026 and SMc04028 are separated by 100 nucleotides SMc04025: SMc04025 - hypothetical protein, at 3,023,553 to 3,024,815 SMc04025 SMc04026: SMc04026 - glutamate synthase, at 3,025,146 to 3,026,603 SMc04026 SMc04028: SMc04028 - glutamate synthase, at 3,026,704 to 3,031,428 SMc04028 Position (kb) 3025 3026 3027Strain fitness (log2 ratio) -1 0 1 2 3at 3024.813 kb on + strandat 3024.813 kb on + strandat 3024.814 kb on - strandat 3024.814 kb on - strandat 3024.875 kb on + strandat 3024.875 kb on + strandat 3025.820 kb on - strand, within SMc04026at 3025.820 kb on - strand, within SMc04026at 3025.898 kb on - strand, within SMc04026at 3026.048 kb on - strand, within SMc04026at 3026.201 kb on + strand, within SMc04026at 3026.202 kb on - strand, within SMc04026at 3026.202 kb on - strand, within SMc04026at 3026.203 kb on + strand, within SMc04026at 3026.203 kb on + strand, within SMc04026at 3026.204 kb on - strand, within SMc04026at 3026.215 kb on + strand, within SMc04026at 3026.216 kb on - strand, within SMc04026at 3026.384 kb on - strand, within SMc04026at 3026.446 kb on + strand, within SMc04026at 3026.592 kb on - strandat 3026.606 kb on + strandat 3026.606 kb on + strandat 3026.607 kb on - strandat 3026.607 kb on - strandat 3026.607 kb on - strandat 3026.607 kb on - strandat 3026.607 kb on - strandat 3026.607 kb on - strandat 3026.760 kb on - strandat 3026.760 kb on - strandat 3026.841 kb on + strandat 3026.842 kb on - strandat 3026.843 kb on + strandat 3026.844 kb on - strandat 3026.844 kb on - strandat 3026.844 kb on - strandat 3026.844 kb on - strandat 3027.050 kb on + strandat 3027.051 kb on - strandat 3027.128 kb on + strandat 3027.129 kb on - strandat 3027.219 kb on - strand, within SMc04028at 3027.219 kb on - strand, within SMc04028at 3027.219 kb on - strand, within SMc04028at 3027.252 kb on + strand, within SMc04028at 3027.253 kb on - strand, within SMc04028at 3027.344 kb on + strand, within SMc04028

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,024,813 + +0.3
3,024,813 + -0.3
3,024,814 - -1.5
3,024,814 - +1.3
3,024,875 + -0.6
3,024,875 + +0.3
3,025,820 - SMc04026 0.46 +2.8
3,025,820 - SMc04026 0.46 +1.0
3,025,898 - SMc04026 0.52 +0.9
3,026,048 - SMc04026 0.62 +0.5
3,026,201 + SMc04026 0.72 +0.8
3,026,202 - SMc04026 0.72 +0.4
3,026,202 - SMc04026 0.72 +1.0
3,026,203 + SMc04026 0.72 +0.6
3,026,203 + SMc04026 0.72 +0.5
3,026,204 - SMc04026 0.73 +0.3
3,026,215 + SMc04026 0.73 +0.1
3,026,216 - SMc04026 0.73 +0.7
3,026,384 - SMc04026 0.85 +1.1
3,026,446 + SMc04026 0.89 +1.5
3,026,592 - -0.9
3,026,606 + +0.7
3,026,606 + +0.6
3,026,607 - +0.9
3,026,607 - +0.3
3,026,607 - +0.4
3,026,607 - +1.5
3,026,607 - +0.6
3,026,607 - +1.1
3,026,760 - +0.9
3,026,760 - +0.2
3,026,841 + +0.7
3,026,842 - +0.3
3,026,843 + -0.5
3,026,844 - +0.5
3,026,844 - +1.1
3,026,844 - +1.0
3,026,844 - +0.7
3,027,050 + +1.8
3,027,051 - +0.5
3,027,128 + +0.8
3,027,129 - -0.9
3,027,219 - SMc04028 0.11 +0.5
3,027,219 - SMc04028 0.11 -0.1
3,027,219 - SMc04028 0.11 +0.7
3,027,252 + SMc04028 0.12 +0.4
3,027,253 - SMc04028 0.12 +0.9
3,027,344 + SMc04028 0.14 +0.7

Or see this region's nucleotide sequence