Strain Fitness in Sinorhizobium meliloti 1021 around SMc03826

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03825 and SMc03826 are separated by 62 nucleotidesSMc03826 and SMc03827 are separated by 212 nucleotidesSMc03827 and SMc03828 are separated by 133 nucleotides SMc03825: SMc03825 - transporter, at 3,491,154 to 3,492,392 SMc03825 SMc03826: SMc03826 - argininosuccinate synthase, at 3,492,455 to 3,493,672 SMc03826 SMc03827: SMc03827 - amino acid efflux transmembrane protein, at 3,493,885 to 3,494,526 SMc03827 SMc03828: SMc03828 - ABC transporter ATP-binding protein, at 3,494,660 to 3,495,454 SMc03828 Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3491.764 kb on - strand, within SMc03825at 3491.774 kb on + strand, within SMc03825at 3491.774 kb on + strand, within SMc03825at 3491.774 kb on + strand, within SMc03825at 3491.774 kb on + strand, within SMc03825at 3491.774 kb on + strand, within SMc03825at 3491.775 kb on - strand, within SMc03825at 3491.836 kb on - strand, within SMc03825at 3491.836 kb on - strand, within SMc03825at 3492.029 kb on - strand, within SMc03825at 3492.096 kb on + strand, within SMc03825at 3492.097 kb on - strand, within SMc03825at 3492.097 kb on - strand, within SMc03825at 3492.097 kb on - strand, within SMc03825at 3492.097 kb on - strand, within SMc03825at 3492.126 kb on + strand, within SMc03825at 3492.126 kb on + strand, within SMc03825at 3492.127 kb on - strand, within SMc03825at 3492.127 kb on - strand, within SMc03825at 3492.307 kb on - strandat 3492.307 kb on - strandat 3492.442 kb on + strandat 3492.443 kb on - strandat 3492.456 kb on + strandat 3492.457 kb on - strandat 3492.531 kb on + strandat 3493.053 kb on + strand, within SMc03826at 3493.053 kb on + strand, within SMc03826at 3493.482 kb on + strand, within SMc03826at 3493.482 kb on + strand, within SMc03826at 3493.483 kb on - strand, within SMc03826at 3493.746 kb on - strandat 3494.055 kb on + strand, within SMc03827at 3494.056 kb on - strand, within SMc03827at 3494.056 kb on - strand, within SMc03827at 3494.140 kb on + strand, within SMc03827at 3494.141 kb on - strand, within SMc03827at 3494.147 kb on + strand, within SMc03827at 3494.217 kb on + strand, within SMc03827at 3494.373 kb on - strand, within SMc03827at 3494.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,491,764 - SMc03825 0.49 -0.1
3,491,774 + SMc03825 0.50 -0.4
3,491,774 + SMc03825 0.50 -0.7
3,491,774 + SMc03825 0.50 +0.1
3,491,774 + SMc03825 0.50 +0.3
3,491,774 + SMc03825 0.50 -0.6
3,491,775 - SMc03825 0.50 +0.3
3,491,836 - SMc03825 0.55 -0.5
3,491,836 - SMc03825 0.55 +0.1
3,492,029 - SMc03825 0.71 -0.2
3,492,096 + SMc03825 0.76 -0.3
3,492,097 - SMc03825 0.76 -0.3
3,492,097 - SMc03825 0.76 +0.2
3,492,097 - SMc03825 0.76 +0.4
3,492,097 - SMc03825 0.76 +0.1
3,492,126 + SMc03825 0.78 -0.3
3,492,126 + SMc03825 0.78 +0.1
3,492,127 - SMc03825 0.79 +0.3
3,492,127 - SMc03825 0.79 -0.5
3,492,307 - +0.6
3,492,307 - +0.0
3,492,442 + +0.6
3,492,443 - +0.2
3,492,456 + +0.3
3,492,457 - -1.0
3,492,531 + -1.8
3,493,053 + SMc03826 0.49 -1.5
3,493,053 + SMc03826 0.49 -3.4
3,493,482 + SMc03826 0.84 -5.3
3,493,482 + SMc03826 0.84 -3.4
3,493,483 - SMc03826 0.84 -3.0
3,493,746 - -0.5
3,494,055 + SMc03827 0.26 +0.6
3,494,056 - SMc03827 0.27 -0.5
3,494,056 - SMc03827 0.27 +0.0
3,494,140 + SMc03827 0.40 -0.3
3,494,141 - SMc03827 0.40 +0.5
3,494,147 + SMc03827 0.41 +0.4
3,494,217 + SMc03827 0.52 +0.2
3,494,373 - SMc03827 0.76 +0.2
3,494,589 + +0.1

Or see this region's nucleotide sequence