Strain Fitness in Sinorhizobium meliloti 1021 around SMc03777

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03776 and SMc03777 overlap by 8 nucleotidesSMc03777 and SMc03778 are separated by 35 nucleotidesSMc03778 and SMc03780 are separated by 44 nucleotides SMc03776: SMc03776 - gamma-glutamyl kinase, at 3,442,200 to 3,443,381 SMc03776 SMc03777: SMc03777 - gamma-glutamyl phosphate reductase, at 3,443,374 to 3,444,657 SMc03777 SMc03778: SMc03778 - nicotinic acid mononucleotide adenylyltransferase, at 3,444,693 to 3,445,280 SMc03778 SMc03780: SMc03780 - hypothetical protein, at 3,445,325 to 3,445,816 SMc03780 Position (kb) 3443 3444 3445Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3442.656 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.745 kb on + strand, within SMc03776at 3443.341 kb on + strandat 3443.342 kb on - strandat 3443.767 kb on + strand, within SMc03777at 3443.767 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.197 kb on + strand, within SMc03777at 3444.197 kb on + strand, within SMc03777at 3444.293 kb on + strand, within SMc03777at 3444.293 kb on + strand, within SMc03777at 3444.423 kb on + strand, within SMc03777at 3445.317 kb on + strandat 3445.336 kb on + strandat 3445.336 kb on + strandat 3445.341 kb on - strandat 3445.510 kb on - strand, within SMc03780at 3445.510 kb on - strand, within SMc03780at 3445.532 kb on - strand, within SMc03780

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,442,656 + SMc03776 0.39 -3.8
3,442,743 + SMc03776 0.46 +0.9
3,442,743 + SMc03776 0.46 -1.8
3,442,743 + SMc03776 0.46 -4.2
3,442,745 + SMc03776 0.46 -4.3
3,443,341 + +1.1
3,443,342 - -0.5
3,443,767 + SMc03777 0.31 -3.5
3,443,767 + SMc03777 0.31 -2.9
3,444,097 + SMc03777 0.56 -5.0
3,444,097 + SMc03777 0.56 -3.4
3,444,097 + SMc03777 0.56 -4.9
3,444,097 + SMc03777 0.56 -2.0
3,444,097 + SMc03777 0.56 -3.9
3,444,097 + SMc03777 0.56 -6.0
3,444,097 + SMc03777 0.56 -4.4
3,444,097 + SMc03777 0.56 -1.7
3,444,197 + SMc03777 0.64 -3.5
3,444,197 + SMc03777 0.64 -1.8
3,444,293 + SMc03777 0.72 -5.3
3,444,293 + SMc03777 0.72 -3.8
3,444,423 + SMc03777 0.82 -5.7
3,445,317 + +0.3
3,445,336 + +0.2
3,445,336 + +0.9
3,445,341 - -1.0
3,445,510 - SMc03780 0.38 -0.5
3,445,510 - SMc03780 0.38 -1.8
3,445,532 - SMc03780 0.42 +0.3

Or see this region's nucleotide sequence