Strain Fitness in Sinorhizobium meliloti 1021 around SMc03776

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03775 and SMc03776 are separated by 2 nucleotidesSMc03776 and SMc03777 overlap by 8 nucleotides SMc03775: SMc03775 - GTPase ObgE, at 3,441,067 to 3,442,197 SMc03775 SMc03776: SMc03776 - gamma-glutamyl kinase, at 3,442,200 to 3,443,381 SMc03776 SMc03777: SMc03777 - gamma-glutamyl phosphate reductase, at 3,443,374 to 3,444,657 SMc03777 Position (kb) 3442 3443 3444Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3442.195 kb on + strandat 3442.656 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.743 kb on + strand, within SMc03776at 3442.745 kb on + strand, within SMc03776at 3443.341 kb on + strandat 3443.342 kb on - strandat 3443.767 kb on + strand, within SMc03777at 3443.767 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.097 kb on + strand, within SMc03777at 3444.197 kb on + strand, within SMc03777at 3444.197 kb on + strand, within SMc03777at 3444.293 kb on + strand, within SMc03777at 3444.293 kb on + strand, within SMc03777

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,442,195 + -0.9
3,442,656 + SMc03776 0.39 -3.8
3,442,743 + SMc03776 0.46 +0.9
3,442,743 + SMc03776 0.46 -1.8
3,442,743 + SMc03776 0.46 -4.2
3,442,745 + SMc03776 0.46 -4.3
3,443,341 + +1.1
3,443,342 - -0.5
3,443,767 + SMc03777 0.31 -3.5
3,443,767 + SMc03777 0.31 -2.9
3,444,097 + SMc03777 0.56 -5.0
3,444,097 + SMc03777 0.56 -3.4
3,444,097 + SMc03777 0.56 -4.9
3,444,097 + SMc03777 0.56 -2.0
3,444,097 + SMc03777 0.56 -3.9
3,444,097 + SMc03777 0.56 -6.0
3,444,097 + SMc03777 0.56 -4.4
3,444,097 + SMc03777 0.56 -1.7
3,444,197 + SMc03777 0.64 -3.5
3,444,197 + SMc03777 0.64 -1.8
3,444,293 + SMc03777 0.72 -5.3
3,444,293 + SMc03777 0.72 -3.8

Or see this region's nucleotide sequence