Strain Fitness in Sinorhizobium meliloti 1021 around SMc03263

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03263 and SMc03264 are separated by 81 nucleotides SMc03263: SMc03263 - hypothetical protein, at 3,378,930 to 3,379,202 SMc03263 SMc03264: SMc03264 - dipeptidase, at 3,379,284 to 3,380,294 SMc03264 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -2 -1 0 1 2at 3377.955 kb on - strandat 3378.035 kb on + strandat 3378.036 kb on - strandat 3378.038 kb on - strandat 3378.095 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.159 kb on - strandat 3378.159 kb on - strandat 3378.159 kb on - strandat 3378.168 kb on + strandat 3378.213 kb on - strandat 3378.299 kb on + strandat 3378.299 kb on + strandat 3378.300 kb on - strandat 3378.320 kb on + strandat 3378.320 kb on + strandat 3378.320 kb on + strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.332 kb on - strandat 3378.332 kb on - strandat 3378.332 kb on - strandat 3378.580 kb on - strandat 3378.596 kb on - strandat 3378.596 kb on - strandat 3378.667 kb on - strandat 3378.675 kb on + strandat 3378.676 kb on - strandat 3378.676 kb on - strandat 3378.682 kb on - strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.706 kb on - strandat 3378.706 kb on - strandat 3378.872 kb on - strandat 3379.190 kb on - strandat 3379.243 kb on + strandat 3379.277 kb on + strandat 3379.426 kb on + strand, within SMc03264at 3379.426 kb on + strand, within SMc03264at 3379.426 kb on + strand, within SMc03264at 3379.426 kb on + strand, within SMc03264at 3379.426 kb on + strand, within SMc03264at 3379.426 kb on + strand, within SMc03264at 3379.538 kb on - strand, within SMc03264at 3379.593 kb on - strand, within SMc03264at 3379.721 kb on + strand, within SMc03264at 3379.791 kb on + strand, within SMc03264at 3379.791 kb on + strand, within SMc03264at 3379.811 kb on + strand, within SMc03264at 3379.812 kb on - strand, within SMc03264at 3379.814 kb on - strand, within SMc03264at 3379.814 kb on - strand, within SMc03264at 3379.821 kb on - strand, within SMc03264at 3379.887 kb on - strand, within SMc03264at 3379.887 kb on - strand, within SMc03264at 3379.942 kb on + strand, within SMc03264at 3379.943 kb on - strand, within SMc03264at 3379.943 kb on - strand, within SMc03264at 3379.979 kb on - strand, within SMc03264at 3380.018 kb on + strand, within SMc03264at 3380.019 kb on - strand, within SMc03264at 3380.070 kb on + strand, within SMc03264at 3380.070 kb on + strand, within SMc03264at 3380.072 kb on + strandat 3380.073 kb on - strand, within SMc03264at 3380.073 kb on - strand, within SMc03264

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,377,955 - -0.3
3,378,035 + -1.4
3,378,036 - +0.2
3,378,038 - +0.3
3,378,095 + -0.5
3,378,158 + +0.5
3,378,158 + +0.2
3,378,158 + +0.6
3,378,158 + +0.2
3,378,158 + -0.9
3,378,158 + +0.0
3,378,159 - -0.4
3,378,159 - -0.0
3,378,159 - +0.1
3,378,168 + +0.2
3,378,213 - -0.8
3,378,299 + +0.2
3,378,299 + -0.4
3,378,300 - -0.1
3,378,320 + +0.0
3,378,320 + -0.3
3,378,320 + +0.0
3,378,321 - +0.7
3,378,321 - +0.5
3,378,321 - +1.9
3,378,321 - +0.5
3,378,332 - +0.1
3,378,332 - -0.9
3,378,332 - +0.0
3,378,580 - -0.3
3,378,596 - -0.5
3,378,596 - -0.0
3,378,667 - -0.6
3,378,675 + -0.1
3,378,676 - +0.0
3,378,676 - -0.3
3,378,682 - +0.1
3,378,705 + -0.3
3,378,705 + -0.4
3,378,705 + -0.4
3,378,705 + -0.5
3,378,706 - +0.2
3,378,706 - -0.9
3,378,872 - +0.2
3,379,190 - +0.1
3,379,243 + +0.4
3,379,277 + -0.4
3,379,426 + SMc03264 0.14 +0.0
3,379,426 + SMc03264 0.14 +0.2
3,379,426 + SMc03264 0.14 +0.1
3,379,426 + SMc03264 0.14 +0.1
3,379,426 + SMc03264 0.14 -0.5
3,379,426 + SMc03264 0.14 -0.3
3,379,538 - SMc03264 0.25 +0.8
3,379,593 - SMc03264 0.31 -0.7
3,379,721 + SMc03264 0.43 -1.8
3,379,791 + SMc03264 0.50 +0.6
3,379,791 + SMc03264 0.50 +0.2
3,379,811 + SMc03264 0.52 +1.2
3,379,812 - SMc03264 0.52 +0.2
3,379,814 - SMc03264 0.52 +0.3
3,379,814 - SMc03264 0.52 -0.2
3,379,821 - SMc03264 0.53 -0.3
3,379,887 - SMc03264 0.60 +0.8
3,379,887 - SMc03264 0.60 -0.0
3,379,942 + SMc03264 0.65 -0.5
3,379,943 - SMc03264 0.65 +0.6
3,379,943 - SMc03264 0.65 -0.1
3,379,979 - SMc03264 0.69 +0.5
3,380,018 + SMc03264 0.73 +0.4
3,380,019 - SMc03264 0.73 +0.9
3,380,070 + SMc03264 0.78 +0.4
3,380,070 + SMc03264 0.78 -0.7
3,380,072 + +0.3
3,380,073 - SMc03264 0.78 -0.0
3,380,073 - SMc03264 0.78 +0.0

Or see this region's nucleotide sequence