Strain Fitness in Sinorhizobium meliloti 1021 around SMc03172

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03171 and SMc03172 are separated by 267 nucleotidesSMc03172 and SMc03173 are separated by 10 nucleotides SMc03171: SMc03171 - hypothetical protein, at 3,132,063 to 3,132,815 SMc03171 SMc03172: SMc03172 - glutamyl-tRNA synthetase, at 3,133,083 to 3,134,540 SMc03172 SMc03173: SMc03173 - lysyl-tRNA synthetase, at 3,134,551 to 3,136,047 SMc03173 Position (kb) 3133 3134 3135Strain fitness (log2 ratio) -1 0 1at 3132.127 kb on + strandat 3132.127 kb on + strandat 3132.717 kb on + strand, within SMc03171at 3132.717 kb on + strand, within SMc03171at 3132.717 kb on + strand, within SMc03171at 3132.718 kb on - strand, within SMc03171at 3132.718 kb on - strand, within SMc03171at 3132.718 kb on - strand, within SMc03171at 3132.723 kb on + strand, within SMc03171at 3132.723 kb on + strand, within SMc03171at 3132.934 kb on + strandat 3132.934 kb on + strandat 3132.934 kb on + strandat 3132.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,132,127 + +0.7
3,132,127 + -0.1
3,132,717 + SMc03171 0.87 +0.7
3,132,717 + SMc03171 0.87 +0.2
3,132,717 + SMc03171 0.87 +0.0
3,132,718 - SMc03171 0.87 -0.7
3,132,718 - SMc03171 0.87 +0.5
3,132,718 - SMc03171 0.87 +0.4
3,132,723 + SMc03171 0.88 +0.4
3,132,723 + SMc03171 0.88 +0.1
3,132,934 + +0.6
3,132,934 + +0.0
3,132,934 + -0.3
3,132,934 + +0.0

Or see this region's nucleotide sequence