Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02566 and SMc02567 are separated by 613 nucleotides SMc02567 and SMc02568 overlap by 4 nucleotides SMc02568 and SMc02569 are separated by 64 nucleotides
SMc02566: SMc02566 - alkylated DNA repair protein, at 55,295 to 55,915
SMc02566
SMc02567: SMc02567 - pantothenate kinase, at 56,529 to 57,524
SMc02567
SMc02568: SMc02568 - phosphoribosyl-ATP pyrophosphatase, at 57,521 to 57,844
SMc02568
SMc02569: SMc02569 - imidazole glycerol phosphate synthase subunit HisF, at 57,909 to 58,685
SMc02569
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 55.631 kb on + strand, within SMc02566 at 55.844 kb on + strand, within SMc02566 at 55.845 kb on - strand, within SMc02566 at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 55.976 kb on - strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.357 kb on + strand at 56.370 kb on + strand at 56.370 kb on + strand at 56.478 kb on + strand at 57.632 kb on - strand, within SMc02568 at 57.639 kb on + strand, within SMc02568 at 57.864 kb on + strand at 57.865 kb on - strand at 57.873 kb on + strand at 57.874 kb on - strand at 57.903 kb on - strand at 57.971 kb on - strand at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569 at 58.248 kb on + strand, within SMc02569
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 55,631 + SMc02566 0.54 -0.0 55,844 + SMc02566 0.88 +1.0 55,845 - SMc02566 0.89 -0.1 55,976 - -0.3 55,976 - -0.0 55,976 - -0.6 55,976 - +0.2 55,976 - -0.2 56,357 + +0.4 56,357 + +0.4 56,357 + -0.5 56,357 + +0.1 56,357 + -0.5 56,357 + -0.8 56,357 + +0.2 56,370 + -0.1 56,370 + +0.0 56,478 + +1.2 57,632 - SMc02568 0.34 -3.1 57,639 + SMc02568 0.36 -1.6 57,864 + -2.7 57,865 - +0.9 57,873 + -3.4 57,874 - +0.5 57,903 - -0.6 57,971 - -3.1 58,248 + SMc02569 0.44 -3.8 58,248 + SMc02569 0.44 -4.4 58,248 + SMc02569 0.44 -4.4 58,248 + SMc02569 0.44 -3.6
Or see this region's nucleotide sequence