Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01880 and SMc01879 are separated by 338 nucleotides SMc01879 and SMc01878 are separated by 301 nucleotides
SMc01880: SMc01880 - pantoate--beta-alanine ligase, at 2,326,002 to 2,326,877
SMc01880
SMc01879: SMc01879 - hypothetical protein, at 2,327,216 to 2,327,620
SMc01879
SMc01878: SMc01878 - NAD-dependent DNA ligase LigA, at 2,327,922 to 2,330,075
SMc01878
Position (kb)
2327
2328 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2326.374 kb on - strand, within SMc01880 at 2326.583 kb on - strand, within SMc01880 at 2326.583 kb on - strand, within SMc01880 at 2326.583 kb on - strand, within SMc01880 at 2326.666 kb on + strand, within SMc01880 at 2326.713 kb on + strand, within SMc01880 at 2326.714 kb on - strand, within SMc01880 at 2326.784 kb on - strand, within SMc01880 at 2326.928 kb on - strand at 2327.042 kb on - strand at 2327.062 kb on - strand at 2327.117 kb on + strand at 2327.117 kb on + strand at 2327.117 kb on + strand at 2327.125 kb on + strand at 2327.126 kb on - strand at 2327.126 kb on - strand at 2327.126 kb on - strand at 2327.347 kb on + strand, within SMc01879 at 2327.347 kb on + strand, within SMc01879 at 2327.348 kb on - strand, within SMc01879 at 2327.348 kb on - strand, within SMc01879 at 2327.488 kb on + strand, within SMc01879 at 2327.489 kb on - strand, within SMc01879 at 2327.540 kb on + strand, within SMc01879 at 2327.541 kb on - strand, within SMc01879 at 2327.541 kb on - strand, within SMc01879
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,326,374 - SMc01880 0.42 -2.6 2,326,583 - SMc01880 0.66 -2.9 2,326,583 - SMc01880 0.66 -1.1 2,326,583 - SMc01880 0.66 -4.1 2,326,666 + SMc01880 0.76 -2.0 2,326,713 + SMc01880 0.81 -2.4 2,326,714 - SMc01880 0.81 -2.4 2,326,784 - SMc01880 0.89 -1.7 2,326,928 - -0.5 2,327,042 - -0.5 2,327,062 - -0.4 2,327,117 + +0.2 2,327,117 + -0.5 2,327,117 + -0.2 2,327,125 + +0.0 2,327,126 - +0.1 2,327,126 - -1.7 2,327,126 - +0.2 2,327,347 + SMc01879 0.32 +0.5 2,327,347 + SMc01879 0.32 +0.1 2,327,348 - SMc01879 0.33 -0.2 2,327,348 - SMc01879 0.33 -0.4 2,327,488 + SMc01879 0.67 +0.2 2,327,489 - SMc01879 0.67 -0.4 2,327,540 + SMc01879 0.80 -0.0 2,327,541 - SMc01879 0.80 +0.7 2,327,541 - SMc01879 0.80 +0.6
Or see this region's nucleotide sequence