Strain Fitness in Sinorhizobium meliloti 1021 around SMc01756

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01755 and SMc01756 are separated by 304 nucleotidesSMc01756 and SMc01757 are separated by 176 nucleotidesSMc01757 and SMc01758 are separated by 343 nucleotides SMc01755: SMc01755 - transport transmembrane protein, at 1,299,607 to 1,300,842 SMc01755 SMc01756: SMc01756 - aspartyl-tRNA synthetase, at 1,301,147 to 1,302,934 SMc01756 SMc01757: SMc01757 - hypothetical protein, at 1,303,111 to 1,303,491 SMc01757 SMc01758: SMc01758 - chaperonin GroEL, at 1,303,835 to 1,305,463 SMc01758 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -2 -1 0 1at 1300.175 kb on + strand, within SMc01755at 1300.175 kb on + strand, within SMc01755at 1300.175 kb on + strand, within SMc01755at 1300.176 kb on - strand, within SMc01755at 1300.176 kb on - strand, within SMc01755at 1300.179 kb on + strand, within SMc01755at 1300.179 kb on + strand, within SMc01755at 1300.180 kb on - strand, within SMc01755at 1300.180 kb on - strand, within SMc01755at 1300.279 kb on + strand, within SMc01755at 1300.442 kb on + strand, within SMc01755at 1300.667 kb on + strand, within SMc01755at 1300.667 kb on + strand, within SMc01755at 1300.668 kb on - strand, within SMc01755at 1300.668 kb on - strand, within SMc01755at 1300.882 kb on + strandat 1300.904 kb on - strandat 1300.904 kb on - strandat 1300.904 kb on - strandat 1300.930 kb on - strandat 1301.125 kb on + strandat 1303.038 kb on - strandat 1303.271 kb on + strand, within SMc01757at 1303.321 kb on + strand, within SMc01757at 1303.421 kb on - strand, within SMc01757at 1303.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,300,175 + SMc01755 0.46 -0.2
1,300,175 + SMc01755 0.46 -0.5
1,300,175 + SMc01755 0.46 +0.1
1,300,176 - SMc01755 0.46 +0.3
1,300,176 - SMc01755 0.46 -0.6
1,300,179 + SMc01755 0.46 -0.5
1,300,179 + SMc01755 0.46 +0.8
1,300,180 - SMc01755 0.46 +0.4
1,300,180 - SMc01755 0.46 +0.1
1,300,279 + SMc01755 0.54 +0.6
1,300,442 + SMc01755 0.68 -1.0
1,300,667 + SMc01755 0.86 -0.4
1,300,667 + SMc01755 0.86 -0.4
1,300,668 - SMc01755 0.86 +0.4
1,300,668 - SMc01755 0.86 +1.3
1,300,882 + +0.2
1,300,904 - +0.6
1,300,904 - -0.9
1,300,904 - -1.8
1,300,930 - +0.5
1,301,125 + +0.7
1,303,038 - -0.1
1,303,271 + SMc01757 0.42 -0.3
1,303,321 + SMc01757 0.55 -0.0
1,303,421 - SMc01757 0.81 +0.8
1,303,677 - -0.2

Or see this region's nucleotide sequence