Strain Fitness in Sinorhizobium meliloti 1021 around SMc01594

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01588 and SMc01594 are separated by 197 nucleotidesSMc01594 and SMc01597 are separated by 92 nucleotides SMc01588: SMc01588 - aldehyde dehydrogenase, at 2,387,441 to 2,388,826 SMc01588 SMc01594: SMc01594 - hypothetical protein, at 2,389,024 to 2,390,388 SMc01594 SMc01597: SMc01597 - amino-acid permease, at 2,390,481 to 2,392,028 SMc01597 Position (kb) 2389 2390 2391Strain fitness (log2 ratio) -2 -1 0 1at 2388.058 kb on - strandat 2388.117 kb on + strand, within SMc01588at 2388.311 kb on + strand, within SMc01588at 2388.376 kb on + strand, within SMc01588at 2388.377 kb on - strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strandat 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.429 kb on + strand, within SMc01588at 2388.429 kb on + strand, within SMc01588at 2388.545 kb on + strand, within SMc01588at 2388.545 kb on + strand, within SMc01588at 2388.546 kb on - strand, within SMc01588at 2388.550 kb on - strand, within SMc01588at 2388.588 kb on + strand, within SMc01588at 2388.589 kb on - strand, within SMc01588at 2388.765 kb on - strandat 2388.783 kb on + strandat 2388.783 kb on + strandat 2388.894 kb on - strandat 2388.933 kb on + strandat 2388.933 kb on + strandat 2388.971 kb on + strandat 2389.109 kb on + strandat 2389.110 kb on - strandat 2389.110 kb on - strandat 2389.110 kb on - strandat 2389.110 kb on - strandat 2389.110 kb on - strandat 2389.110 kb on - strandat 2389.117 kb on + strandat 2389.118 kb on - strandat 2389.188 kb on + strand, within SMc01594at 2389.189 kb on - strand, within SMc01594at 2389.220 kb on + strand, within SMc01594at 2389.307 kb on + strand, within SMc01594at 2389.432 kb on - strand, within SMc01594at 2389.451 kb on + strand, within SMc01594at 2389.451 kb on + strand, within SMc01594at 2389.461 kb on + strand, within SMc01594at 2389.461 kb on + strand, within SMc01594at 2389.464 kb on - strand, within SMc01594at 2389.479 kb on - strand, within SMc01594at 2389.479 kb on - strand, within SMc01594at 2389.517 kb on + strand, within SMc01594at 2389.518 kb on - strand, within SMc01594at 2389.518 kb on - strand, within SMc01594at 2389.544 kb on + strand, within SMc01594at 2389.544 kb on + strand, within SMc01594at 2389.545 kb on - strand, within SMc01594at 2389.545 kb on - strand, within SMc01594at 2389.635 kb on - strand, within SMc01594at 2389.635 kb on - strand, within SMc01594at 2389.635 kb on - strand, within SMc01594at 2389.874 kb on + strand, within SMc01594at 2389.875 kb on - strand, within SMc01594at 2389.875 kb on - strand, within SMc01594at 2389.875 kb on - strand, within SMc01594at 2389.886 kb on + strand, within SMc01594at 2389.978 kb on - strand, within SMc01594at 2389.978 kb on - strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.979 kb on + strand, within SMc01594at 2389.980 kb on - strand, within SMc01594at 2389.980 kb on - strand, within SMc01594at 2390.150 kb on + strand, within SMc01594at 2390.228 kb on + strand, within SMc01594at 2390.228 kb on + strand, within SMc01594at 2390.229 kb on - strand, within SMc01594at 2390.238 kb on + strand, within SMc01594at 2390.239 kb on - strand, within SMc01594at 2390.271 kb on - strandat 2390.381 kb on + strandat 2390.381 kb on + strandat 2390.476 kb on - strandat 2390.626 kb on + strandat 2390.626 kb on + strandat 2390.627 kb on - strandat 2390.627 kb on - strandat 2390.687 kb on + strand, within SMc01597at 2390.688 kb on - strand, within SMc01597at 2390.688 kb on - strand, within SMc01597at 2390.688 kb on - strand, within SMc01597at 2390.938 kb on + strand, within SMc01597at 2390.939 kb on - strand, within SMc01597at 2391.070 kb on + strand, within SMc01597at 2391.071 kb on - strand, within SMc01597at 2391.071 kb on - strand, within SMc01597at 2391.193 kb on + strand, within SMc01597at 2391.193 kb on + strand, within SMc01597at 2391.193 kb on + strand, within SMc01597at 2391.293 kb on - strand, within SMc01597

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,388,058 - -1.4
2,388,117 + SMc01588 0.49 -0.6
2,388,311 + SMc01588 0.63 -0.9
2,388,376 + SMc01588 0.67 -0.1
2,388,377 - SMc01588 0.68 +0.1
2,388,421 + SMc01588 0.71 -0.2
2,388,421 + SMc01588 0.71 -0.2
2,388,421 + SMc01588 0.71 +0.2
2,388,422 - SMc01588 0.71 +1.1
2,388,422 - SMc01588 0.71 +0.1
2,388,422 - SMc01588 0.71 +0.6
2,388,423 + SMc01588 0.71 -0.9
2,388,423 + SMc01588 0.71 -0.0
2,388,423 + SMc01588 0.71 -0.2
2,388,423 + +0.7
2,388,423 + SMc01588 0.71 -0.1
2,388,423 + SMc01588 0.71 -0.1
2,388,424 - SMc01588 0.71 -1.1
2,388,424 - SMc01588 0.71 +0.4
2,388,424 - SMc01588 0.71 +0.4
2,388,424 - SMc01588 0.71 -0.9
2,388,424 - SMc01588 0.71 -0.3
2,388,424 - SMc01588 0.71 +0.0
2,388,424 - SMc01588 0.71 -1.4
2,388,429 + SMc01588 0.71 +1.3
2,388,429 + SMc01588 0.71 +0.1
2,388,545 + SMc01588 0.80 -0.4
2,388,545 + SMc01588 0.80 -0.1
2,388,546 - SMc01588 0.80 +0.2
2,388,550 - SMc01588 0.80 +0.6
2,388,588 + SMc01588 0.83 -0.8
2,388,589 - SMc01588 0.83 -0.4
2,388,765 - -0.3
2,388,783 + +0.0
2,388,783 + -0.2
2,388,894 - -0.0
2,388,933 + +0.2
2,388,933 + -1.0
2,388,971 + -0.5
2,389,109 + +0.5
2,389,110 - +0.3
2,389,110 - +0.6
2,389,110 - +0.7
2,389,110 - +0.1
2,389,110 - +0.6
2,389,110 - +0.2
2,389,117 + +0.1
2,389,118 - -0.2
2,389,188 + SMc01594 0.12 -0.4
2,389,189 - SMc01594 0.12 +0.2
2,389,220 + SMc01594 0.14 -0.1
2,389,307 + SMc01594 0.21 +0.3
2,389,432 - SMc01594 0.30 +0.1
2,389,451 + SMc01594 0.31 +0.3
2,389,451 + SMc01594 0.31 -0.1
2,389,461 + SMc01594 0.32 +0.2
2,389,461 + SMc01594 0.32 -0.2
2,389,464 - SMc01594 0.32 +0.2
2,389,479 - SMc01594 0.33 +1.0
2,389,479 - SMc01594 0.33 +0.1
2,389,517 + SMc01594 0.36 +0.4
2,389,518 - SMc01594 0.36 -0.4
2,389,518 - SMc01594 0.36 +0.3
2,389,544 + SMc01594 0.38 -0.3
2,389,544 + SMc01594 0.38 -0.5
2,389,545 - SMc01594 0.38 -0.2
2,389,545 - SMc01594 0.38 -0.5
2,389,635 - SMc01594 0.45 -0.2
2,389,635 - SMc01594 0.45 +0.2
2,389,635 - SMc01594 0.45 +0.2
2,389,874 + SMc01594 0.62 -0.0
2,389,875 - SMc01594 0.62 +0.5
2,389,875 - SMc01594 0.62 -0.1
2,389,875 - SMc01594 0.62 +0.0
2,389,886 + SMc01594 0.63 -0.4
2,389,978 - SMc01594 0.70 -0.5
2,389,978 - SMc01594 0.70 -0.0
2,389,979 + SMc01594 0.70 +0.1
2,389,979 + SMc01594 0.70 -0.0
2,389,979 + SMc01594 0.70 +0.1
2,389,979 + SMc01594 0.70 +0.2
2,389,979 + SMc01594 0.70 +0.2
2,389,979 + SMc01594 0.70 -0.5
2,389,980 - SMc01594 0.70 -0.0
2,389,980 - SMc01594 0.70 -0.1
2,390,150 + SMc01594 0.82 -1.0
2,390,228 + SMc01594 0.88 -0.4
2,390,228 + SMc01594 0.88 -0.1
2,390,229 - SMc01594 0.88 -0.6
2,390,238 + SMc01594 0.89 +0.6
2,390,239 - SMc01594 0.89 +0.0
2,390,271 - +1.0
2,390,381 + +0.6
2,390,381 + -0.3
2,390,476 - -1.1
2,390,626 + -0.2
2,390,626 + -0.1
2,390,627 - +0.5
2,390,627 - +0.0
2,390,687 + SMc01597 0.13 +0.9
2,390,688 - SMc01597 0.13 -0.3
2,390,688 - SMc01597 0.13 +0.4
2,390,688 - SMc01597 0.13 -2.2
2,390,938 + SMc01597 0.30 -0.6
2,390,939 - SMc01597 0.30 -0.1
2,391,070 + SMc01597 0.38 +0.2
2,391,071 - SMc01597 0.38 -0.1
2,391,071 - SMc01597 0.38 -0.4
2,391,193 + SMc01597 0.46 +0.2
2,391,193 + SMc01597 0.46 -0.3
2,391,193 + SMc01597 0.46 -0.3
2,391,293 - SMc01597 0.52 -0.0

Or see this region's nucleotide sequence