Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01355 and SMc01354 are separated by 123 nucleotides SMc01354 and SMc01353 are separated by 104 nucleotides SMc01353 and SMc01352 are separated by 48 nucleotides
SMc01355: SMc01355 - Holliday junction resolvase-like protein, at 1,427,252 to 1,427,749
SMc01355
SMc01354: SMc01354 - metal-dependent hydrolase, at 1,427,873 to 1,428,577
SMc01354
SMc01353: SMc01353 - aspartyl/glutamyl-tRNA amidotransferase subunit C, at 1,428,682 to 1,428,969
SMc01353
SMc01352: SMc01352 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 1,429,018 to 1,430,499
SMc01352
Position (kb)
1428
1429 Strain fitness (log2 ratio)
-1
0
1 at 1427.793 kb on + strand at 1427.793 kb on + strand at 1427.794 kb on - strand at 1427.794 kb on - strand at 1427.794 kb on - strand at 1427.810 kb on + strand at 1427.810 kb on + strand at 1427.811 kb on - strand at 1427.811 kb on - strand at 1427.811 kb on - strand at 1427.908 kb on + strand at 1427.937 kb on + strand at 1427.938 kb on - strand at 1428.060 kb on + strand, within SMc01354 at 1428.152 kb on - strand, within SMc01354 at 1428.152 kb on - strand, within SMc01354 at 1428.299 kb on + strand, within SMc01354 at 1428.300 kb on - strand, within SMc01354 at 1428.300 kb on - strand, within SMc01354 at 1428.467 kb on + strand, within SMc01354 at 1428.575 kb on + strand at 1428.575 kb on + strand at 1428.575 kb on + strand at 1428.576 kb on - strand at 1428.576 kb on - strand at 1428.646 kb on + strand at 1428.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,427,793 + +0.3 1,427,793 + +0.3 1,427,794 - +0.1 1,427,794 - +0.0 1,427,794 - +0.1 1,427,810 + -0.8 1,427,810 + -0.1 1,427,811 - +0.6 1,427,811 - +0.4 1,427,811 - -0.0 1,427,908 + -1.0 1,427,937 + -0.4 1,427,938 - -0.1 1,428,060 + SMc01354 0.27 -0.1 1,428,152 - SMc01354 0.40 -0.0 1,428,152 - SMc01354 0.40 -0.4 1,428,299 + SMc01354 0.60 -0.2 1,428,300 - SMc01354 0.61 -0.2 1,428,300 - SMc01354 0.61 +0.4 1,428,467 + SMc01354 0.84 -0.3 1,428,575 + -0.6 1,428,575 + -0.6 1,428,575 + +0.3 1,428,576 - +0.6 1,428,576 - -0.2 1,428,646 + -1.4 1,428,646 + +0.1
Or see this region's nucleotide sequence