Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01354 and SMc01353 are separated by 104 nucleotides SMc01353 and SMc01352 are separated by 48 nucleotides SMc01352 and SMc01351 are separated by 103 nucleotides SMc01351 and SMc01350 are separated by 286 nucleotides
SMc01354: SMc01354 - metal-dependent hydrolase, at 1,427,873 to 1,428,577
SMc01354
SMc01353: SMc01353 - aspartyl/glutamyl-tRNA amidotransferase subunit C, at 1,428,682 to 1,428,969
SMc01353
SMc01352: SMc01352 - aspartyl/glutamyl-tRNA amidotransferase subunit A, at 1,429,018 to 1,430,499
SMc01352
SMc01351: SMc01351 - hypothetical protein, at 1,430,603 to 1,430,857
SMc01351
SMc01350: SMc01350 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,431,144 to 1,432,694
SMc01350
Position (kb)
1429
1430
1431 Strain fitness (log2 ratio)
-1
0
1 at 1428.060 kb on + strand, within SMc01354 at 1428.152 kb on - strand, within SMc01354 at 1428.152 kb on - strand, within SMc01354 at 1428.299 kb on + strand, within SMc01354 at 1428.300 kb on - strand, within SMc01354 at 1428.300 kb on - strand, within SMc01354 at 1428.467 kb on + strand, within SMc01354 at 1428.575 kb on + strand at 1428.575 kb on + strand at 1428.575 kb on + strand at 1428.576 kb on - strand at 1428.576 kb on - strand at 1428.646 kb on + strand at 1428.646 kb on + strand at 1430.567 kb on + strand at 1430.568 kb on - strand at 1430.568 kb on - strand at 1430.568 kb on - strand at 1430.568 kb on - strand at 1430.704 kb on + strand, within SMc01351 at 1430.733 kb on + strand, within SMc01351 at 1430.753 kb on - strand, within SMc01351 at 1430.861 kb on + strand at 1430.877 kb on - strand at 1431.004 kb on + strand at 1431.004 kb on + strand at 1431.005 kb on - strand at 1431.005 kb on - strand at 1431.008 kb on + strand at 1431.008 kb on + strand at 1431.008 kb on + strand at 1431.008 kb on + strand at 1431.008 kb on + strand at 1431.008 kb on + strand at 1431.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,428,060 + SMc01354 0.27 -0.1 1,428,152 - SMc01354 0.40 -0.0 1,428,152 - SMc01354 0.40 -0.4 1,428,299 + SMc01354 0.60 -0.2 1,428,300 - SMc01354 0.61 -0.2 1,428,300 - SMc01354 0.61 +0.4 1,428,467 + SMc01354 0.84 -0.3 1,428,575 + -0.6 1,428,575 + -0.6 1,428,575 + +0.3 1,428,576 - +0.6 1,428,576 - -0.2 1,428,646 + -1.4 1,428,646 + +0.1 1,430,567 + +0.4 1,430,568 - +0.1 1,430,568 - -0.7 1,430,568 - +0.5 1,430,568 - -0.2 1,430,704 + SMc01351 0.40 -1.4 1,430,733 + SMc01351 0.51 -0.4 1,430,753 - SMc01351 0.59 +0.1 1,430,861 + -0.7 1,430,877 - +0.3 1,431,004 + -1.4 1,431,004 + -0.4 1,431,005 - -0.1 1,431,005 - -0.0 1,431,008 + -0.2 1,431,008 + +0.2 1,431,008 + +0.1 1,431,008 + -0.7 1,431,008 + -0.0 1,431,008 + +0.3 1,431,120 + +0.0
Or see this region's nucleotide sequence