Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01175 and SMc01174 are separated by 269 nucleotides SMc01174 and SMc01173 are separated by 7 nucleotides SMc01173 and SMc01172 are separated by 197 nucleotides
SMc01175: SMc01175 - oxidoreductase, at 1,754,542 to 1,755,390
SMc01175
SMc01174: SMc01174 - cysteine synthase A, at 1,755,660 to 1,756,745
SMc01174
SMc01173: SMc01173 - hypothetical protein, at 1,756,753 to 1,757,502
SMc01173
SMc01172: SMc01172 - thiosulfate sulfurtransferase, at 1,757,700 to 1,758,563
SMc01172
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1754.664 kb on + strand, within SMc01175 at 1754.664 kb on + strand, within SMc01175 at 1754.664 kb on + strand, within SMc01175 at 1754.684 kb on + strand, within SMc01175 at 1754.685 kb on - strand, within SMc01175 at 1754.688 kb on + strand, within SMc01175 at 1754.688 kb on + strand, within SMc01175 at 1754.812 kb on - strand, within SMc01175 at 1754.812 kb on - strand, within SMc01175 at 1754.916 kb on - strand, within SMc01175 at 1754.943 kb on - strand, within SMc01175 at 1754.994 kb on + strand, within SMc01175 at 1754.995 kb on - strand, within SMc01175 at 1754.995 kb on - strand, within SMc01175 at 1755.143 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.244 kb on + strand, within SMc01175 at 1755.245 kb on - strand, within SMc01175 at 1755.245 kb on - strand, within SMc01175 at 1755.379 kb on + strand at 1755.380 kb on - strand at 1755.380 kb on - strand at 1755.380 kb on - strand at 1755.435 kb on + strand at 1755.436 kb on - strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.450 kb on + strand at 1755.451 kb on - strand at 1755.451 kb on - strand at 1755.452 kb on + strand at 1755.452 kb on + strand at 1755.453 kb on - strand at 1755.453 kb on - strand at 1755.554 kb on + strand at 1755.555 kb on - strand at 1755.555 kb on - strand at 1755.567 kb on + strand at 1755.596 kb on + strand at 1755.654 kb on + strand at 1755.655 kb on - strand at 1755.666 kb on - strand at 1755.704 kb on + strand at 1755.705 kb on - strand at 1755.705 kb on - strand at 1755.705 kb on - strand at 1755.915 kb on - strand, within SMc01174 at 1755.967 kb on - strand, within SMc01174 at 1756.066 kb on - strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.083 kb on + strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.084 kb on - strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.353 kb on + strand, within SMc01174 at 1756.354 kb on - strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.494 kb on + strand, within SMc01174 at 1756.495 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.524 kb on - strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.623 kb on + strand, within SMc01174 at 1756.624 kb on - strand, within SMc01174 at 1756.636 kb on - strand, within SMc01174 at 1756.717 kb on + strand at 1756.717 kb on + strand at 1756.718 kb on - strand at 1756.718 kb on - strand at 1756.728 kb on + strand at 1756.744 kb on - strand at 1756.744 kb on - strand at 1756.868 kb on - strand, within SMc01173 at 1757.054 kb on - strand, within SMc01173 at 1757.234 kb on - strand, within SMc01173 at 1757.464 kb on - strand at 1757.465 kb on + strand at 1757.596 kb on - strand at 1757.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,754,664 + SMc01175 0.14 -0.9 1,754,664 + SMc01175 0.14 +0.2 1,754,664 + SMc01175 0.14 -0.6 1,754,684 + SMc01175 0.17 -1.5 1,754,685 - SMc01175 0.17 -0.1 1,754,688 + SMc01175 0.17 -0.9 1,754,688 + SMc01175 0.17 -0.2 1,754,812 - SMc01175 0.32 -0.1 1,754,812 - SMc01175 0.32 -0.4 1,754,916 - SMc01175 0.44 -0.0 1,754,943 - SMc01175 0.47 -0.5 1,754,994 + SMc01175 0.53 -0.6 1,754,995 - SMc01175 0.53 +0.4 1,754,995 - SMc01175 0.53 -0.8 1,755,143 + SMc01175 0.71 +0.5 1,755,244 + SMc01175 0.83 +0.2 1,755,244 + SMc01175 0.83 +0.1 1,755,244 + SMc01175 0.83 +0.6 1,755,245 - SMc01175 0.83 +1.1 1,755,245 - SMc01175 0.83 -0.5 1,755,379 + +0.3 1,755,380 - -1.0 1,755,380 - +0.1 1,755,380 - +0.0 1,755,435 + -0.3 1,755,436 - -1.6 1,755,450 + +0.3 1,755,450 + +0.3 1,755,450 + -0.9 1,755,450 + -0.8 1,755,450 + -0.5 1,755,450 + +0.3 1,755,451 - +0.2 1,755,451 - +0.4 1,755,452 + +0.3 1,755,452 + -0.4 1,755,453 - -0.5 1,755,453 - -0.4 1,755,554 + -0.2 1,755,555 - -0.3 1,755,555 - +0.0 1,755,567 + -0.1 1,755,596 + +2.1 1,755,654 + -0.8 1,755,655 - -1.0 1,755,666 - -0.3 1,755,704 + -1.5 1,755,705 - -0.2 1,755,705 - -1.4 1,755,705 - -1.2 1,755,915 - SMc01174 0.23 -1.2 1,755,967 - SMc01174 0.28 -2.1 1,756,066 - SMc01174 0.37 -0.9 1,756,083 + SMc01174 0.39 -1.3 1,756,083 + SMc01174 0.39 -1.0 1,756,083 + SMc01174 0.39 -1.4 1,756,084 - SMc01174 0.39 -1.7 1,756,084 - SMc01174 0.39 -0.2 1,756,084 - SMc01174 0.39 -1.1 1,756,084 - SMc01174 0.39 -0.6 1,756,353 + SMc01174 0.64 -1.7 1,756,353 + SMc01174 0.64 -1.0 1,756,354 - SMc01174 0.64 +0.6 1,756,494 + SMc01174 0.77 -2.8 1,756,494 + SMc01174 0.77 -1.2 1,756,494 + SMc01174 0.77 -1.3 1,756,495 - SMc01174 0.77 -0.7 1,756,524 - SMc01174 0.80 -0.9 1,756,524 - SMc01174 0.80 -1.3 1,756,623 + SMc01174 0.89 -0.0 1,756,623 + SMc01174 0.89 -1.2 1,756,624 - SMc01174 0.89 -1.5 1,756,636 - SMc01174 0.90 -0.7 1,756,717 + -0.2 1,756,717 + -0.4 1,756,718 - -0.1 1,756,718 - +0.3 1,756,728 + -0.6 1,756,744 - -0.5 1,756,744 - +0.6 1,756,868 - SMc01173 0.15 +0.5 1,757,054 - SMc01173 0.40 +0.1 1,757,234 - SMc01173 0.64 +0.1 1,757,464 - -0.3 1,757,465 + +0.8 1,757,596 - -0.3 1,757,672 - +0.1
Or see this region's nucleotide sequence