Strain Fitness in Sinorhizobium meliloti 1021 around SMc01110

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01111 and SMc01110 are separated by 138 nucleotidesSMc01110 and SMc01109 are separated by 336 nucleotides SMc01111: SMc01111 - apolipoprotein N-acyltransferase, at 443,701 to 445,296 SMc01111 SMc01110: SMc01110 - DNA-binding protein, at 445,435 to 445,854 SMc01110 SMc01109: SMc01109 - S-adenosylmethionine synthetase, at 446,191 to 447,471 SMc01109 Position (kb) 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1at 445.282 kb on - strandat 445.284 kb on + strandat 445.435 kb on - strandat 445.628 kb on + strand, within SMc01110at 445.628 kb on + strand, within SMc01110at 445.629 kb on - strand, within SMc01110at 445.629 kb on - strand, within SMc01110at 445.720 kb on + strand, within SMc01110at 445.720 kb on + strand, within SMc01110at 445.720 kb on + strand, within SMc01110at 445.721 kb on - strand, within SMc01110at 445.721 kb on - strand, within SMc01110at 445.812 kb on - strand, within SMc01110at 445.812 kb on - strand, within SMc01110at 445.852 kb on + strandat 445.853 kb on - strandat 445.906 kb on + strandat 445.907 kb on - strandat 445.907 kb on - strandat 446.098 kb on + strandat 446.100 kb on + strandat 446.106 kb on + strandat 446.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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445,282 - -1.0
445,284 + -0.5
445,435 - -1.0
445,628 + SMc01110 0.46 -1.1
445,628 + SMc01110 0.46 -0.5
445,629 - SMc01110 0.46 -0.1
445,629 - SMc01110 0.46 -0.5
445,720 + SMc01110 0.68 -1.7
445,720 + SMc01110 0.68 -1.8
445,720 + SMc01110 0.68 -0.6
445,721 - SMc01110 0.68 -0.8
445,721 - SMc01110 0.68 -2.9
445,812 - SMc01110 0.90 -0.2
445,812 - SMc01110 0.90 -0.9
445,852 + +0.0
445,853 - +0.0
445,906 + +0.4
445,907 - -0.2
445,907 - -0.0
446,098 + -0.1
446,100 + -1.1
446,106 + -0.9
446,109 - -0.0

Or see this region's nucleotide sequence